Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02539 ATGTCGGGGAGTTCTTCTTCTTTTATCGTGATTGAGCATGATGTGTTTCTCAACTTCAGAGGGGAAGACACCCGTGACAACTTCGTTAGTCACCTTTATGCGGAACTACAGAGGAAAAAGATTGAAACATTTATAGATTACAAACTAGACAGAGGCAAAGAGATTTCACCTGTACTGCACAAAGCAATAGAAGAATCAAAGATTTATGTCCTCGTTTTCTCCAAAGACTATGCATCTTCCACATGGTGTTTGGATGAACTCACAAAGATACTCGAATGCAAGAAGAGATATGGAAGGGATGTCATACCAGTTTTCTACAAGGTGGATCCATCAAATGTTAGGAACCAGAGAGAGAGGTATGCAGAAGCATTTGTTAAGCATGAACAGCGCTTTAGAGACAACATGGACAAAGTGCACGCATGGAAGGCTGCTCTAACCGAAGCAGCTGGAATCTCGGGCTGGGATTCACGAGTCACCAGGCCAGAATCCACACTTGTTGAAAAAATTGTGAAAGATATTTTGACAAAATTGAATCGTTTTTCCATGAGTGATCATCAAGGAATTATTGGAATTGAATACCATATTGCTCGAATCCAGTCCACGTTGCACCTTGAGTCACTGTCTAATAGGATCATAGGAATTTGGGGCATGGGTGGAATAGGAAAAACTACAATTGCCAAGCAAATATATCACAAATTGGCATTGCAGTTCGGTTCCAGCAGCCTCGTTTTAAACGTTGAAGAAGAAATACAAAGGCATGGAATACACCATATAGGAACAAGATGTTTATCAGAGCTTATAAAGGAAGCATCTTCTGGAAGCAAACGGACAAAGGTTCTCCTCATTCTTGATGATGTGAACAATTGGGATCCACTAAAAGAAATAATTGAAAGGTTTCTTAATTTTGGCCAGGGCAATAGAATTGTTGTGACCAGTAGAGACATGCAAGTGCTTAAGAATGCTGGAGCTGATGAAATCTATGAAGTTAAGGAGATTGAATTTTCAAGATTCTCTAAAACTGTTCAGTTTAAATGCTTTTAA 1041 0.3948 MSGSSSSFIVIEHDVFLNFRGEDTRDNFVSHLYAELQRKKIETFIDYKLDRGKEISPVLHKAIEESKIYVLVFSKDYASSTWCLDELTKILECKKRYGRDVIPVFYKVDPSNVRNQRERYAEAFVKHEQRFRDNMDKVHAWKAALTEAAGISGWDSRVTRPESTLVEKIVKDILTKLNRFSMSDHQGIIGIEYHIARIQSTLHLESLSNRIIGIWGMGGIGKTTIAKQIYHKLALQFGSSSLVLNVEEEIQRHGIHHIGTRCLSELIKEASSGSKRTKVLLILDDVNNWDPLKEIIERFLNFGQGNRIVVTSRDMQVLKNAGADEIYEVKEIEFSRFSKTVQFKCF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02539 346 Pfam NB-ARC domain 192 329 IPR002182 GO:0043531
Pumo6g02539 346 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 324 IPR044974 GO:0006952
Pumo6g02539 346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 342 IPR027417 -
Pumo6g02539 346 Pfam TIR domain 13 186 IPR000157 GO:0007165
Pumo6g02539 346 SMART AAA_5 208 338 IPR003593 GO:0016887
Pumo6g02539 346 SMART till_3 12 151 IPR000157 GO:0007165
Pumo6g02539 346 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 179 - -
Pumo6g02539 346 Gene3D - 181 329 IPR027417 -
Pumo6g02539 346 Gene3D - 10 180 IPR035897 -
Pumo6g02539 346 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 154 IPR035897 -
Pumo6g02539 346 PRINTS Disease resistance protein signature 273 287 - -
Pumo6g02539 346 PRINTS Disease resistance protein signature 211 226 - -
Pumo6g02539 346 ProSiteProfiles TIR domain profile. 11 177 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02539 Pumo-Chr6 59404190 59405628 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02539 12 336 WRKY Transcription Factor Family AT4G12020 28.235 3.04e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02539 - - gmx:100814075 484.952