Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02535 ATGGATCCCAATGATGATAAGGGTGAAAGTAGACTCTATATTGGTAACCTTGATCTTAGAATTACAGAAGCTGCTTTGCTTAAAATGTTTTCTCCATATGGAAAGATAATTTCTGAGGACTTCTTATGGCACACGCGAGGCCCAAAACGCGGGGAGCCACGCGGTTTTGCCTTTATTCAGTACAGCTCAAAAGAGGAAGCAAAATTAGCCAAGGAGAAGATGCATGGAAGGTTAGCTTGCGGCCGGCCATTGGTGGTTCGTCTCGCTGGTGAGAAGTGCATGTTGGAAACAGCTAATAACTCTACAAAAGCACCAGGTGAAGGGCATAAGATGCATCTCACTGGTGGTGGTGGTGGTGCCATGGGGCAAACAAGTCGTAATACCAAAATAGCTGCTATAAAAAATAAACTGAAATCCTTAGAGGAGGAGAGTTCTAGGACCAAGAAGCAGAAGCAAAGTGACAATATTTCTTGA 474 0.4388 MDPNDDKGESRLYIGNLDLRITEAALLKMFSPYGKIISEDFLWHTRGPKRGEPRGFAFIQYSSKEEAKLAKEKMHGRLACGRPLVVRLAGEKCMLETANNSTKAPGEGHKMHLTGGGGGAMGQTSRNTKIAAIKNKLKSLEEESSRTKKQKQSDNIS 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02535 157 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 5 95 - -
Pumo6g02535 157 SMART rrm1_1 11 87 IPR000504 GO:0003723
Pumo6g02535 157 MobiDBLite consensus disorder prediction 132 157 - -
Pumo6g02535 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 84 IPR000504 GO:0003723
Pumo6g02535 157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 91 IPR000504 GO:0003723
Pumo6g02535 157 CDD RRM_RBM18 11 89 IPR039157 -
Pumo6g02535 157 Coils Coil 130 150 - -
Pumo6g02535 157 MobiDBLite consensus disorder prediction 135 150 - -
Pumo6g02535 157 Gene3D - 2 132 IPR012677 -
Pumo6g02535 157 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02535 10 92 Eukaryotic Initiation Factors Gene Family AT3G16380 38.554 2.29e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02535 K24527 - gmx:100806572 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02535 6 59302319 59304576 Pumo6g02535 6 59302319 59304576 ECH