Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02526 ATGGTTTCCAAAAACCCGAACCCGCCCGAGGGATTCTACTTGGATCCCACTGGCATGGCTCTGCCGGGGATGCCTCCCTTGGCCGCCGCCGCCGCGAACTTGTCGGAGGACGCCGCCAAGAAGATCCGCAAGCCATACACCATCACCAAGTCAAGGGAGAACTGGACCGAACCCGAACACGACAAGTTCCTCGAAGCCATTCAACTGTTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGACTGTTATACAGATACGTAGCCATGCACAGAAATACTTTCTAAAAGTTCAGAAGAGTGGGACAAGTGAACATCTTCCACCACCCAGGCCCAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATGCTCCTGTACTCTCACAAGCATCAGGACCTCTTCAATCTTCATCTGCTTTGCTTGAACCTGGATATATCCTGAAGAATGATGCCCCACCAATGCTTAAAATTCCTATTATGAACACTGTGGCGTCGTCCTGGTCAAACAACACCCTGCAAACTGTCAATTTATCTCCTGTGACAAAAGTGAATAATCCTTGCAGTAGCGGTGAAAGCACTCCTAAAGTGCGGCCAGTTGGTGAATCTAATGGTCAAGGGAATAAAAGCCATCCATTGAGAGTTCTTCCAGATTTTACTCAGGTATATGGCTTCATTGGCAGTGTATTTGACCCAAATGCAACTGAGCATCTGCAGAAACTAAAAATGATGGACCGTATAGATGTTGAAACGGTGCTACTATTAATGAGAAACCTGTCCATCAATTTAACTAGCCCAGATTTTGAGGATCATAGAAAGCTCCTTTCATCATATGAGATTGAACCAGAGAAAAATAACTATCAATGA 882 0.4512 MVSKNPNPPEGFYLDPTGMALPGMPPLAAAAANLSEDAAKKIRKPYTITKSRENWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHLPPPRPKRKAAHPYPQKASKNAPVLSQASGPLQSSSALLEPGYILKNDAPPMLKIPIMNTVASSWSNNTLQTVNLSPVTKVNNPCSSGESTPKVRPVGESNGQGNKSHPLRVLPDFTQVYGFIGSVFDPNATEHLQKLKMMDRIDVETVLLLMRNLSINLTSPDFEDHRKLLSSYEIEPEKNNYQ 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02526 293 SMART sant 51 99 IPR001005 -
Pumo6g02526 293 NCBIfam myb-like DNA-binding domain, SHAQKYF class 50 99 IPR006447 GO:0003677
Pumo6g02526 293 FunFam protein REVEILLE 6 isoform X1 54 102 - -
Pumo6g02526 293 ProSiteProfiles SANT domain profile. 50 101 IPR017884 -
Pumo6g02526 293 Gene3D - 54 102 - -
Pumo6g02526 293 MobiDBLite consensus disorder prediction 190 215 - -
Pumo6g02526 293 SUPERFAMILY Homeodomain-like 46 102 IPR009057 -
Pumo6g02526 293 PANTHER SWI/SNF COMPLEX-RELATED 36 269 - -
Pumo6g02526 293 MobiDBLite consensus disorder prediction 190 218 - -
Pumo6g02526 293 Pfam Myb-like DNA-binding domain 52 97 IPR001005 -
Pumo6g02526 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 101 IPR017930 -
Pumo6g02526 293 CDD SANT 54 97 IPR001005 -
Pumo6g02526 293 ProSiteProfiles Myb-like domain profile. 47 97 IPR001005 -
Pumo6g02526 293 MobiDBLite consensus disorder prediction 102 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02526 Pumo-Chr6 59026167 59034210 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo6g02526 Myb_DNA-binding 2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02526 - - gmx:778054 515.383