Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02512 ATGACTCATGAGGATTGGGATCTCTTTGCCATCGTTAGAAGTTGCAAAGCTGCAACCTTTACTGCCACCACCACAAACACAGAAACCCCACCCACCACCACTACTCCTGGATCCCCTAACACTACCTCTTCCTTGGATGTGAGCCATGAAAATGGATCATTCTCTTTTCCCGATCTTGTGCAACCAACAACCAATGGGTTCCAAGAGCTTCACCAATTGTTAATAAACTTCAACCCCACCAACACCACCAGCACCAGCACCATTACTAGCACTAGCACTATCACTAGTGGTCTTGGCATCAATCCCAATTCCACTTTTTCTGAAGTTGCGGGATTCATTGGACAACAGCAGACACAGCAAAGTCACCACCATCACCTGGTTCCTGCTCCCACAAATCACACCTCCATTGGAGCACCCTCCACTACTGGTTTTGACAGATTCCAACACCACCAACAACAGCAACTCCAAACCCCAGAACCACAGCAAAACCAACCACCCCTTCAAGCACGCCAAACAAGTCCCATCCTTTCACCAACCACACAACCACAAACATCCAGATCAAGGAAAAGAAAAAGCCAACAGAAGAAAATGGTGTGCCATGTAACCGCAGACAACCTCTCATCAGACTTGTGGGCATGGCGAAAATATGGACAAAAACCCATCAAAGGCTCTCCATATCCAAGGAACTATTACAGATGCAGTAGCTGCAAAGGCTGCGCCGCGAGAAAGCAAGTAGAAGCGAAGCACCATCGAACCCGAATACGTTCATCGTGA 774 0.478 MTHEDWDLFAIVRSCKAATFTATTTNTETPPTTTTPGSPNTTSSLDVSHENGSFSFPDLVQPTTNGFQELHQLLINFNPTNTTSTSTITSTSTITSGLGINPNSTFSEVAGFIGQQQTQQSHHHHLVPAPTNHTSIGAPSTTGFDRFQHHQQQQLQTPEPQQNQPPLQARQTSPILSPTTQPQTSRSRKRKSQQKKMVCHVTADNLSSDLWAWRKYGQKPIKGSPYPRNYYRCSSCKGCAARKQVEAKHHRTRIRSS 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02512 257 SMART WRKY_cls 207 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo6g02512 257 ProSiteProfiles WRKY domain profile. 202 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo6g02512 257 MobiDBLite consensus disorder prediction 22 44 - -
Pumo6g02512 257 SUPERFAMILY WRKY DNA-binding domain 202 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo6g02512 257 MobiDBLite consensus disorder prediction 115 187 - -
Pumo6g02512 257 Gene3D WRKY domain 190 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo6g02512 257 MobiDBLite consensus disorder prediction 115 199 - -
Pumo6g02512 257 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 246 IPR044810 GO:0003700
Pumo6g02512 257 Pfam WRKY DNA -binding domain 209 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02512 Pumo-Chr6 58735134 58736247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02512 186 246 WRKY Transcription Factor Family AT5G52830 86.885 1.27e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo6g02512 WRKY 8e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02512 - - gsj:114367469 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00766 7 13482014 13482483 Pumo6g02512 6 58735134 58736247 ECH
Pumo5g00220 5 5400398 5402503 Pumo6g02512 6 58735134 58736247 ECH
Pumo7g00265 7 3112891 3118463 Pumo6g02512 6 58735134 58736247 ECH
Pumo6g02512 6 58735134 58736247 Pumo6g02512 6 58735134 58736247 ECH