Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo6g02509 | ATGGCTTCCGATCTCGAAGCGAAAGCCAAAGAGGCCTTCGTCGAAGACCACTTCGAACTCGCCGTGGACCTTCTCACTCAGGCCATTCGCCTCGAACCCAGCAAAGCCGAACTCTACGCCGACCGCGCCCAAGCCAACATCAAACTCAACAACTTCACTGAGGCTGTTGCTGATGCTAGCAAAGCAATTGAATTGAATCCTTCTCTACCAAAAGCATATTTGCGGAAAGGTACTGCATGCATGAAGCTTGAGGAATATGAGACTGCAAAGGCTGCTCTGGAGGCGGGTGCATCATTCTCTCCAGACAACTCAAGGTTTGCTACTTTGATCAAAGAATGCGATAAGCTCATTGCAGAAGAATCTTATACCATACCTATACAGGAAAAGACCACAACACAGGATGATACTCCAAAAGATGTTCAGCAACAGGATGATCTTCCAGAGAAGCCAACAGTTGCAGTGGCTAAACCTAAATATAGGCATGAATTCTACCAGAAACCTGATCAGGTGGTTGTAACCATATTTGCAAAGAAAATCCCAAAGGAAAGCATTACTGTCGACTTCGGTGAACAAATACTAAGTGTTAGTATTAATGTCCCTGGAGAAGATGCATATGTTTTTCAACCTCGCTTATTTGGAAAGATCGTACCTTCCAATTGCCAATATGAAGTTTTGTCAACCAAAATTGAAATTCGCCTTGTGAAAGCTGAACCTATTCTCTGGACATCTCTAGAATTCACCAGAGAAATTGTTGTTCCACAGAGGGTTAATGCTTCTTCAGTTACTGGAACTCAGAGACCTACTTACCCGTCCTCAAAACCAACAAGAGATTGGGACAAGCTTGTAGCTCAAGTCAAGAAAGAGGAGAAAGATGAAAAGCTTGATGGTGATGCTGCGTTGAACAAATTTTTCCGTGAAATATATCAAGATGCAGATGAGGATACAAGAAAAGCAATGAAAAAGTCATTTGTTGAGTCTAATGGGACAGTGCTGTCTACAAACTGGAAAGAAGTTGGATCAAAGAAGGTTGAGGGAAGTCCTCCTGATGGCATGGAGTTGAAGAAATGGGAATATTAA | 1077 | 0.428 | MASDLEAKAKEAFVEDHFELAVDLLTQAIRLEPSKAELYADRAQANIKLNNFTEAVADASKAIELNPSLPKAYLRKGTACMKLEEYETAKAALEAGASFSPDNSRFATLIKECDKLIAEESYTIPIQEKTTTQDDTPKDVQQQDDLPEKPTVAVAKPKYRHEFYQKPDQVVVTIFAKKIPKESITVDFGEQILSVSINVPGEDAYVFQPRLFGKIVPSNCQYEVLSTKIEIRLVKAEPILWTSLEFTREIVVPQRVNASSVTGTQRPTYPSSKPTRDWDKLVAQVKKEEKDEKLDGDAALNKFFREIYQDADEDTRKAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMELKKWEY | 358 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo6g02509 | 358 | SMART | tpr_5 | 2 | 35 | IPR019734 | GO:0005515 | |
| Pumo6g02509 | 358 | SMART | tpr_5 | 36 | 69 | IPR019734 | GO:0005515 | |
| Pumo6g02509 | 358 | SMART | tpr_5 | 70 | 103 | IPR019734 | GO:0005515 | |
| Pumo6g02509 | 358 | Gene3D | - | 157 | 247 | IPR008978 | - | |
| Pumo6g02509 | 358 | SUPERFAMILY | TPR-like | 3 | 113 | IPR011990 | GO:0005515 | |
| Pumo6g02509 | 358 | Pfam | CS domain | 160 | 235 | IPR007052 | - | |
| Pumo6g02509 | 358 | PANTHER | PROTEIN SGT1 HOMOLOG | 1 | 356 | IPR044563 | GO:0051087 | |
| Pumo6g02509 | 358 | ProSiteProfiles | CS domain profile. | 156 | 245 | IPR007052 | - | |
| Pumo6g02509 | 358 | Pfam | Tetratricopeptide repeat | 71 | 103 | IPR019734 | GO:0005515 | |
| Pumo6g02509 | 358 | Pfam | Tetratricopeptide repeat | 36 | 68 | IPR019734 | GO:0005515 | |
| Pumo6g02509 | 358 | FunFam | Protein SGT1 homolog A | 154 | 257 | - | - | |
| Pumo6g02509 | 358 | Gene3D | Tetratricopeptide repeat domain | 1 | 149 | IPR011990 | GO:0005515 | |
| Pumo6g02509 | 358 | ProSiteProfiles | SGS domain profile. | 268 | 358 | IPR007699 | - | |
| Pumo6g02509 | 358 | MobiDBLite | consensus disorder prediction | 126 | 146 | - | - | |
| Pumo6g02509 | 358 | ProSiteProfiles | TPR repeat profile. | 36 | 69 | IPR019734 | GO:0005515 | |
| Pumo6g02509 | 358 | SUPERFAMILY | HSP20-like chaperones | 144 | 253 | IPR008978 | - | |
| Pumo6g02509 | 358 | Pfam | SGS domain | 276 | 356 | IPR007699 | - | |
| Pumo6g02509 | 358 | FunFam | Protein SGT1 homolog | 1 | 133 | - | - | |
| Pumo6g02509 | 358 | CDD | p23_CS_SGT1_like | 162 | 245 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo6g02509 | Pumo-Chr6 | 58296049 | 58301097 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo6g02509 | 1 | 101 | U-box Gene Family | AT3G07370 | 28.571 | 5.23e-06 | 45.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo6g02509 | K12795 | - | gmx:100780174 | 650.588 |