Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02480 ATGGATACAGACAGATCTTCACTAGTGAAGGACCTGGAGTTGTTTCCCAATGGTGACCTAACTGAAATAGGCGAGAGAGGAGTTAACCTAAGTGGAGGTCAGAAGCAGAGAATTCAACTTGCACGTGCTCTTTATCAGAATGCTGATATATATCTTCTGGATGATCCATTCAGTGCTGTTGATGCACATACTGCCACAAATTTGTTTAAATATGGCTTTGAAACTTGGCAGGAATACATCATGGAAGGACTTAAAGGGAAAACTGTCTTACTTGTTACTCATCAAGTTGACTTCCTTCCAGCATTTGATTCTGTTTTGAGATACTACTTTGCCTCTGCTAAAGAAGTAATGCGGATGAATGGCACAACAAAATCCTTTGTAGCTAATCATATTGCTGAAACTGTTGCTGGAGTGGTGACAATAAGGGCTTTTGAGGGGCAAGATCGTTTTTTGGCAAAGAATCTTGATTTAATTGATATCAATGCTAGTCCTTCCTTCCATAGTTTTGCCTCAAATGAGTGGTTGATCCTACGTTTAGAAATTGTAGCTGCAGTTGTTCTTGCCTCCGGAGCACTTTGCATGGTCTTGTTTCCACATGGGACTTTCACATCTGGATTTATTGGCTTGGCTCTCTCTTATGGCCTTACACTAAGCTTTCAGCTAGTATTTTCAATTCAAAGTCAATGCAATCTTGCAAATTACATAATCTCTGTTGAGAGGCTAAATCAATATATGCATATACCAAGTGAGGCCGAACAAGTAATAGAAGGAAATCGTCCTCCTTCGAATTGGCCAGTTGCTGGTAAAGTAGAGCTAAATGACTTGAAGATACGATACCGGCCTGATGGACCACTTATACTCCATGGAATCACATGCACATTCAAAGCAGGGCACAAGATTGGAATTGTTGGCAGGACAGGCAGTGGGAAGTCCACTCTTATAGGCGCTTTATTTCGTCTTGTGGAGCCAGCAGGTGGAAAAATTGTAGTTGATGGCATAGACATATCTTCTATTGGCCTTCATGATTTGAGGTCACGTTTTGGAGTTATACCTCAGGATCCTACCCTTTTTAATGGGACTATTAGATATAATTTGGACCCTTTATCTCAACACTCTGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCGAGAAGTTGTCCAAGAGAAAGAAGAGGGCCTAAATTCCTCAGTTGTTGAAGATGGATCAAACTGGAGCATGGGGCAAAGACAGCTATTTTGTTTGGGGCGTGCTATTTTGAGAAGTAGTAAGATATTGGTGCTGGATGAAGCAACAGCATCAATTGATAATGCAACTGATTTGATTCTGCAGAAAACCATTAGGACTGAATTTGCTGATTGTACTGTGATCACAGTAGCACACAGAATACCAACTGTGATGGATTGCACTATGGTTCTTTCAATCAGTGATGGTACATGTCAGTCATTGAATGCCAATTTGTCATCTTCTTTGTCAAAAGAGAGGCGGAGGCCTGCGCCGCCCCCGGAAGAAGACGAGTGGCTCCAGAAGCTTCCGGAGAAGTCGAAGCCGCTCTACTCCCACAGCCTCCCCTGCATTGAGGCCTGGCTCCGGAGCCTCGGCTTCTGCCAGAGCAAGGAGGACCGGGCACTCTGGGTGGTTCACAAGCCCGATTGGCACGCCCACCTCTCCCTCGATGTCACTGATCTTTACATAAGGTATTTGAAGAGTGGACCTGGAAACCTTGAAAAAGATGTGGAGAGGAGGTTTAGTTATGCTTTGAGCAGAGAAGACATTGAGAATGCCGTACTTGGAGGACCATAG 1809 0.4362 MDTDRSSLVKDLELFPNGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATNLFKYGFETWQEYIMEGLKGKTVLLVTHQVDFLPAFDSVLRYYFASAKEVMRMNGTTKSFVANHIAETVAGVVTIRAFEGQDRFLAKNLDLIDINASPSFHSFASNEWLILRLEIVAAVVLASGALCMVLFPHGTFTSGFIGLALSYGLTLSFQLVFSIQSQCNLANYIISVERLNQYMHIPSEAEQVIEGNRPPSNWPVAGKVELNDLKIRYRPDGPLILHGITCTFKAGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKIVVDGIDISSIGLHDLRSRFGVIPQDPTLFNGTIRYNLDPLSQHSDQEIWEVLGKCQLREVVQEKEEGLNSSVVEDGSNWSMGQRQLFCLGRAILRSSKILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISDGTCQSLNANLSSSLSKERRRPAPPPEEDEWLQKLPEKSKPLYSHSLPCIEAWLRSLGFCQSKEDRALWVVHKPDWHAHLSLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02480 602 Pfam ABC transporter 287 435 IPR003439 GO:0005524
Pumo6g02480 602 Gene3D - 253 495 IPR027417 -
Pumo6g02480 602 SUPERFAMILY ABC transporter transmembrane region 99 250 IPR036640 GO:0005524|GO:0016020
Pumo6g02480 602 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 270 504 IPR003439 GO:0005524
Pumo6g02480 602 CDD ABCC_MRP_domain2 268 481 - -
Pumo6g02480 602 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 106 489 - -
Pumo6g02480 602 Gene3D ABC transporter type 1, transmembrane domain 103 252 IPR036640 GO:0005524|GO:0016020
Pumo6g02480 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 483 IPR027417 -
Pumo6g02480 602 SMART AAA_5 296 479 IPR003593 GO:0016887
Pumo6g02480 602 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 105 233 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo6g02480 602 FunFam ABC transporter C family member 3 253 497 - -
Pumo6g02480 602 Pfam ABC transporter 21 57 IPR003439 GO:0005524
Pumo6g02480 602 Gene3D - 15 64 IPR027417 -
Pumo6g02480 602 Pfam Protein of unknown function (DUF3143) 535 601 IPR021489 -
Pumo6g02480 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 106 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02480 Pumo-Chr6 56982790 56991872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02480 10 96 Calmodulin-binding Proteins AT2G36910 42.529 1.33e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02480 K05666 - gmx:100787314 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02480 6 56982790 56991872 Pumo6g02480 6 56982790 56991872 ECH