Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02471 ATGTGGAACTCAAATGTTTATCTTCAGTGCTATTACAAAAAGCATACAACATCATTCTCTTTTGGTGTTCGCCTATTCACTGCATGTTACTTCTTAAATATTCCTTTACATGCAAATAATCTTTTCACTTTTGTGGCAACTTTACAACTCATGCAAGATCCAATTTCTGTCATCCCGGATGTAATTGGAGTGGTCATTCAAGCAAAAGTTGCATTTGCACGGATTGTAAAGTTCCTTGATGCACCAGAGCTGCAGAGTTCAAATGTCAGGAAAAGGTGCTTTAATGAGAAGCTCAAGGGTTCAATTTTAATCAAATCTGCAGACTTTTCATGGGAATGCAATGTATCAAAGCCAACATTGAGAAACATAGATTTAGAGGTTAGACCTGGGCAAAAGATTGCTATTTGTGGAGAAGTTGGCTCAGGAAAATCAACTCTCTTGGCAGCAATTCTTGGAGAAGTTCCTAACACTAAAAGAAATTTTGCTTATGTTTCTCAAACAGCATGGATACCAACAGGAACAATACAGGAAAATATTTTGCTTGGATCAGCTTTGGATGTTCAAAGGTATCAAAAGACACTTCATAGGTCTTCATTGGTGAAGGACCATGAGTTGTTTCCCCGTGGTGAGTTTACTGAAATAGGTGAGAGAGGAGTTAACCTGAGTGGGGGGCAGAAGCAGCGAGTTCAACTTGCTCGTGCTCTTTATCAGAATGCTGATGTATATCTCTTGGATGATCCATTCAGTGCTGTTGATGCACATACTGCCATAAATTTGTTTAATGAATACATATTGGAATGTATTTCAGGGAAGACAGTCTTACTGGTGTCTCATCAAGTTGACTTTCTCCCAGCATTTGACTCTGTTTTGGAAGAAGAGAGAGAAAGAGGAGACATAGGGTGGAAGCCTTATTTACAGTATCTGAATCAGAACAGAGGTTATATATACTTCTCTGTGGCTTCTCTGTCTCGCCTTATGTTTGTAATCTGCCAGATATTGCAAAACTCATGGATGGCTGCTAATGTTGATAATTCTCAAGTCAGCACATTGCAATTGATTGGTGTTTACATCCTGATTGGAGTTAGTTCTATAGTTTTCATGTTGATCAGAAGTCTTCTTGCAGTTGCTTTGGGCCTTCAATCATCAAAATATTTATTTTCTCATTTGGTGAACTCCTTTTTCCGTGCACCTATGTCTTTCTATGACTCCACACCTTTGGGAAGGATACTTAGCAGGTTCTCATTGGATTTAAGCATTGTGGATCTTGATATCCCATTTGTTCTCACTTATACTGCGGGATCTACTATAAGCTGCTATGCTGATCTCACAGTTTTGGCAGTCGTCACCTGGCAAGTCTTGTTTGTTGCTATACCAATGGTTTATGTTGTTATCCGCTTGCAGAGACATTACTTTGCTGCTGCAAAAGAATATATGCGGATGAATGGCACAACAAAATCCTTTGTAGCTAATCATGTAGCTGAAACTGCTGCTGGAGCAATGACAATAAGGGCTTTTGAAGAGGAAGATCGTTTTTTTGTGAAGAATCTCAATCTAATAGATACCAATGCTAGTCCTTTCTTCCATAGTTTTGCTTCAAATGAGTGGTTGATCCTTCGATTAGAAACAGCCTGTGCAGTTGTTCTTGCCTCTATGGCACTTTGCATGGTTGTGCTTCCACCTGGGACTTTAACCTCTGGTGAGACTTCAGTTATTGTTACCATTTAA 1725 0.3925 MWNSNVYLQCYYKKHTTSFSFGVRLFTACYFLNIPLHANNLFTFVATLQLMQDPISVIPDVIGVVIQAKVAFARIVKFLDAPELQSSNVRKRCFNEKLKGSILIKSADFSWECNVSKPTLRNIDLEVRPGQKIAICGEVGSGKSTLLAAILGEVPNTKRNFAYVSQTAWIPTGTIQENILLGSALDVQRYQKTLHRSSLVKDHELFPRGEFTEIGERGVNLSGGQKQRVQLARALYQNADVYLLDDPFSAVDAHTAINLFNEYILECISGKTVLLVSHQVDFLPAFDSVLEEERERGDIGWKPYLQYLNQNRGYIYFSVASLSRLMFVICQILQNSWMAANVDNSQVSTLQLIGVYILIGVSSIVFMLIRSLLAVALGLQSSKYLFSHLVNSFFRAPMSFYDSTPLGRILSRFSLDLSIVDLDIPFVLTYTAGSTISCYADLTVLAVVTWQVLFVAIPMVYVVIRLQRHYFAAAKEYMRMNGTTKSFVANHVAETAAGAMTIRAFEEEDRFFVKNLNLIDTNASPFFHSFASNEWLILRLETACAVVLASMALCMVVLPPGTLTSGETSVIVTI 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02471 574 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 319 574 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo6g02471 574 FunFam Multidrug resistance-associated protein 1 83 323 - -
Pumo6g02471 574 SMART AAA_5 129 296 IPR003593 GO:0016887
Pumo6g02471 574 FunFam ABC transporter C family member 5 284 573 - -
Pumo6g02471 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 290 IPR027417 -
Pumo6g02471 574 CDD ABCC_MRP_domain1 102 290 - -
Pumo6g02471 574 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 104 319 IPR003439 GO:0005524
Pumo6g02471 574 Pfam ABC transporter 120 248 IPR003439 GO:0005524
Pumo6g02471 574 CDD ABC_6TM_ABCC_D2 313 573 IPR044726 GO:0140359
Pumo6g02471 574 ProSitePatterns ABC transporters family signature. 221 235 IPR017871 GO:0005524|GO:0016887
Pumo6g02471 574 Gene3D ABC transporter type 1, transmembrane domain 4 83 IPR036640 GO:0005524|GO:0016020
Pumo6g02471 574 Gene3D - 97 315 IPR027417 -
Pumo6g02471 574 Gene3D ABC transporter type 1, transmembrane domain 316 574 IPR036640 GO:0005524|GO:0016020
Pumo6g02471 574 Pfam ABC transporter transmembrane region 318 570 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo6g02471 574 SUPERFAMILY ABC transporter transmembrane region 304 567 IPR036640 GO:0005524|GO:0016020
Pumo6g02471 574 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 7 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02471 Pumo-Chr6 56351072 56353749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02471 96 289 Calmodulin-binding Proteins AT2G36910 30.415 2.21e-20 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02471 K05666 - egt:105971630 711.449