Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02469 ATGTCGTTTTGGTGGTTGAATCCATTGATGAAAAGGGGCCAAGAGAAAACACTTCAGGACGAGGATATCCCGAAGTTGCGAGAATCAGATCGAGCAGAGAGTTGCTATATGTCATTTTTAGAACAATTAAACAGAAAAAAAGGAAAAGAACCATTATCACAATCATTAGTTTTGTGGACTATAGTTTTGTGCCACAGGAGAGAGATTTTGATGACTGGATTCTTTGCATTGCTCAAGGTACTCACCATGTCTACTGGTCCTGTTCTTCTGAATGCTTTTATATTGGTTTCTGAGGGTAAGGGAAGTTTCAAATATGAGGGTTATGTATTGGTTATATCACTTTTCATTATAAAGATCATAGAGTCCCTATCACAAAGGCAGTGGTATTTCCGCAGTAGGCTTGTTGGGATGAAAGTTAGGTCACTACTTACAGCAGCCATTTATAAAAAACTATTGAGGTTATCCAGTGCAGCTAGATTGACACACTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCATATAGAATTGGAGAATTCCCATATTGGTTTCACCAGTCATGGACAACAAGCCTCCAAATATGTATTGCATTGGTAATACTTTTTAATGCTATTGGGGTAGCAACAATTGCTTCATTGGTGGTGATAGTTCTCACTGTTCTTTGCAACGCTCCACTAGCAAAGTTGCAGCATAAGTTTCAGAGCGAACTCATGGTGGCACAAGATGAGAGATTAAAGGCCAGCACTGAGGCTCTTACGAATATGAAAGTCCTGAAGCTGTATGCATGGGAATCCCATTTTAAAAATGCTATAGAAAGATTAAGAAATTTGGAACTGAAAATTTTAGGTGCCGTGCAATTGAGAAAGGCGTACAACATCTTTCTATTTTGGACCTCACCTATTTTGGTCTCTGCTGCTTCTTTTGGGACATGCTACTTCTTGAATATTCCTTTGCATGCAAATAATCTTTTCACATTTGTGGCAACTATACGCCTTGTGCAGGAGCCAATTACAGCCATCCCAGATGTTATTGGGGTGGTCATTCAAGCAAAAGTGGCATTTGCCCGGATTGTTAAATTCCTTGAGGCACCTGAATTGCAAAGTGAAAGTGAAAATTTCAGGAATAGAAATTTTGATGACAGTAATAAAGGCCCAATTTCAATCAAATCTGCTTACTTTTCATGGGAAGGTAATGAATCAAAGTCAACACTGAGGAACATAAACTTGGAGATCAGACATGGTCAAAAGTTGGCTATTTGTGGAGAAGTTGGCTCAGGCAAATCAACCCTCTTAGCTACAATTCTTGGAGAGGTTCCTATGACCAAAGGAACTATTGAAGTTTATGGAAAGTTTGCATATGTTTCTCAAACAGCATGGATACAGACAGGTACTATAAGGGAAAATATTTTGTTTGGATCCGATTTGGATGCTCATAGATATCAAGAAACACTTCGTAGATCTTCACTACTTAAGGACCTGGATCTGTTTCCCCATGGAGATCTCACTGAAATAGGTGAGAGAGGAGTTAACTTGAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCACGTGCACTTTATCAGAATGCTGATGTATATCTCTTGGATGATCCATTCAGTGCTGTTGATGCACATACTGCCACAAATTTGTTTAATGAATACATCATGGATGGTCTCAAAGAGAAAACAGTTTTACTCGTAACTCATCAAGTTGACTTTCTACCAGCGTTTGATTCTGTTTTGTTGATGTCAAATGGGGAAATCCTAGAAGCTGCTCCTTATCATCATTTGTTGTCCTCAAGCCAAGAATTCCAAGATCTTGTTAATGCTCACAAGAAAACTGCCGGTTCTGACAAGCATATGAATGTTACTTCTTCCAAGAGACATTCAACTTCTGCTAGAGAGATTACACAAGCTTTCAAGGAAAAGCAGTTAAAAGCAACAAATGGAAATCAGTTAATACAGGAAGAAGAGAGAGAGATAGGAGACACAGGGTTGAAGCCTTACATGCAGTATTTGAATCAGCCGAAAGGCTACATATACTTCTTTGTGGCTTCTCTTTGTCACCTCTTGTTTGTCATCTGCCAGATATTGCAAAACTCATGGATGGCTGCTAATGTTGACAATTCCCAAGTCAGCACATTGCGGTTGATTGTAGTTTACTTCTTGATTGGAGCTGTTTCTACAATTTTCTTGCTGATCAGAACTCTACTTGTAGTAGCCTTGGGTATTCAATCATCAACATCTTTATTTTTACAGTTAATGAACTCCCTTTTTTCTGCACCGATGTCCTTTTATGACTCTACACCATTGGGAAGGATACTTAGTAGGGTCTCATCAGATCTAAGCATTATGGATCTTGATATCCCATTTATCATCGCTTATACTGTGGGAGGTACTACAAACTTCTATTCCAATCTCGCAGTTTTAGCAATTATCACTTGGCAAATCTTGCTTATCTCTGTACCGATGGTTTACATTGCAATACTCTTGCAGAGATACTACTTTTCCACTGCAAAAGAAGTGATGCGCATGAATGGCACAACAAAGTCCTTTGTAGCCAATCATATAGCTGAAACTACTGCTGGAGTTGTGACAATAAGAGCCTTTGAAGAAGAAGATCGTTTCTTTGAGAAGAATCTTGATCTAATTGACATCAATGCTAGTCCTTTCTTCCATAGTTTTGCCTCAAATGAGTGGCTGATCCAAAGATTAGAAATAATTAGTGCAGTACTTCTTTCCTCCACAGCACTATGCATGGTTATGCTTCCACCTGGGACATTCAGCTCTGGATTCATTGGCATGGCTCTCTCTTATGGCCTTACACTAAATGCTCAGCTAGTATTTTCAATTCAAAGTCAATGCAATCTTGCAAATTACATAATCTCTGTAGAGAGGCTAAATCAATATATGCATATACCAAGTGAGGCCGGAGAAGTAATAGAAGGAAATCGTCCTCCTTCGAATTGGCCGGTTGCTGGTAAAGTACAGCTAAATGACTTGAAGATACGATACCGGCCTGATGGACCACTTATACTCCATGGAATCACATGCACATTCAAAGCAGGGCACAAGATTGGAATTGTTGGCAGGACAGGCAGTGGGAAGTCGACTCTTATCAGTGCTTTATTTCGTCTTGTGGAGCCGGCAGGTGGAAAAATTGTAGTTGATGGCATAGACATATCTTCTATTGGCCTTCATGATTTGAGGTCACGTTTTGGTGTTATACCTCAGGATCCTACCCTTTTTAATGGGACTGTTAGATATAATTTGGACCCTTTATCTCAACACTCTGATCACGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGAGAGCAGCTGTCCAAGAGAAACAAGAGGGCCTAAACTCCTCAGTTGTTGAAGATGGATCAAACTGGAGCATGGGACAAAGGCAATTATTTTGTTTGGGGCGTGCGCTTTTAAGGAGAAGTAGGATATTGGTGCTGGATGAAGCTACTGCATCAATCGACAATGCAACTGATTTGATTCTGCAGAAAACCATTAGGACTGAGTTTGCAGATTGTACAGTGATCACAGTAGCACACAGGATACCAACCGTGATGGATTGCACTATGGTTCTTTCAATCAGTGATGGAAAATTGGTGGAGTATGATGAACCAAAGAGCTTGATGAAGAAAGAAGGATCTCTATTCAAGCAGCTTGTCAAGGAGTACTGGTCTCATTTTCAATCTGCAGAATCACATTGA 3729 0.3993 MSFWWLNPLMKRGQEKTLQDEDIPKLRESDRAESCYMSFLEQLNRKKGKEPLSQSLVLWTIVLCHRREILMTGFFALLKVLTMSTGPVLLNAFILVSEGKGSFKYEGYVLVISLFIIKIIESLSQRQWYFRSRLVGMKVRSLLTAAIYKKLLRLSSAARLTHSGGEIMNYVTVDAYRIGEFPYWFHQSWTTSLQICIALVILFNAIGVATIASLVVIVLTVLCNAPLAKLQHKFQSELMVAQDERLKASTEALTNMKVLKLYAWESHFKNAIERLRNLELKILGAVQLRKAYNIFLFWTSPILVSAASFGTCYFLNIPLHANNLFTFVATIRLVQEPITAIPDVIGVVIQAKVAFARIVKFLEAPELQSESENFRNRNFDDSNKGPISIKSAYFSWEGNESKSTLRNINLEIRHGQKLAICGEVGSGKSTLLATILGEVPMTKGTIEVYGKFAYVSQTAWIQTGTIRENILFGSDLDAHRYQETLRRSSLLKDLDLFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADVYLLDDPFSAVDAHTATNLFNEYIMDGLKEKTVLLVTHQVDFLPAFDSVLLMSNGEILEAAPYHHLLSSSQEFQDLVNAHKKTAGSDKHMNVTSSKRHSTSAREITQAFKEKQLKATNGNQLIQEEEREIGDTGLKPYMQYLNQPKGYIYFFVASLCHLLFVICQILQNSWMAANVDNSQVSTLRLIVVYFLIGAVSTIFLLIRTLLVVALGIQSSTSLFLQLMNSLFSAPMSFYDSTPLGRILSRVSSDLSIMDLDIPFIIAYTVGGTTNFYSNLAVLAIITWQILLISVPMVYIAILLQRYYFSTAKEVMRMNGTTKSFVANHIAETTAGVVTIRAFEEEDRFFEKNLDLIDINASPFFHSFASNEWLIQRLEIISAVLLSSTALCMVMLPPGTFSSGFIGMALSYGLTLNAQLVFSIQSQCNLANYIISVERLNQYMHIPSEAGEVIEGNRPPSNWPVAGKVQLNDLKIRYRPDGPLILHGITCTFKAGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIVVDGIDISSIGLHDLRSRFGVIPQDPTLFNGTVRYNLDPLSQHSDHEIWEVLGKCQLRAAVQEKQEGLNSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISDGKLVEYDEPKSLMKKEGSLFKQLVKEYWSHFQSAESH 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02469 1242 SUPERFAMILY ABC transporter transmembrane region 58 363 IPR036640 GO:0005524|GO:0016020
Pumo6g02469 1242 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 996 1230 IPR003439 GO:0005524
Pumo6g02469 1242 ProSitePatterns ABC transporters family signature. 512 526 IPR017871 GO:0005524|GO:0016887
Pumo6g02469 1242 Gene3D - 360 635 IPR027417 -
Pumo6g02469 1242 FunFam ABC transporter C family member 10 371 623 - -
Pumo6g02469 1242 FunFam ABC transporter C family member 10 53 366 - -
Pumo6g02469 1242 CDD ABC_6TM_ABCC_D2 682 971 IPR044726 GO:0140359
Pumo6g02469 1242 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 70 350 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo6g02469 1242 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 387 610 IPR003439 GO:0005524
Pumo6g02469 1242 Pfam ABC transporter transmembrane region 70 336 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo6g02469 1242 Pfam ABC transporter transmembrane region 680 935 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo6g02469 1242 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 683 959 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo6g02469 1242 Gene3D ABC transporter type 1, transmembrane domain 57 359 IPR036640 GO:0005524|GO:0016020
Pumo6g02469 1242 FunFam ABC transporter C family member 5 645 977 - -
Pumo6g02469 1242 SMART AAA_5 1022 1214 IPR003593 GO:0016887
Pumo6g02469 1242 SMART AAA_5 414 587 IPR003593 GO:0016887
Pumo6g02469 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 986 1228 IPR027417 -
Pumo6g02469 1242 CDD ABC_6TM_ABCC_D1 72 358 IPR044746 GO:0140359
Pumo6g02469 1242 FunFam ABC transporter C family member 3 979 1231 - -
Pumo6g02469 1242 Pfam ABC transporter 1013 1161 IPR003439 GO:0005524
Pumo6g02469 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 610 IPR027417 -
Pumo6g02469 1242 CDD ABCC_MRP_domain2 994 1214 - -
Pumo6g02469 1242 SUPERFAMILY ABC transporter transmembrane region 679 976 IPR036640 GO:0005524|GO:0016020
Pumo6g02469 1242 Pfam ABC transporter 405 539 IPR003439 GO:0005524
Pumo6g02469 1242 CDD ABCC_MRP_domain1 387 587 - -
Pumo6g02469 1242 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 1230 - -
Pumo6g02469 1242 Gene3D ABC transporter type 1, transmembrane domain 643 977 IPR036640 GO:0005524|GO:0016020
Pumo6g02469 1242 Gene3D - 980 1232 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02469 Pumo-Chr6 56025042 56030790 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02469 381 638 Calmodulin-binding Proteins AT2G36910 29.749 1.20e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02469 K05666 - gmx:100787314 2322.74