Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02468 ATGGACGATTTTTGGAGCATGATTTGTGGCGATTCTGTTTGTTCTGAGACTGTAGGAAAGCCTTTCTGTTATGATTTGAGGTTTTTGAAAGATCCTTCCACATGCATCATACATTTGATGATAATTTTCTTTGATGTGTTACTGCTGATCATGATGGCATTTGTTATGATTCGGAAGTCTTCGTTGAGACTGTTTCGGGTGGAAAGATATTCAAATTTGCAGCTAGTTTCAGCCATACTCAATGGCTCTGTTGGGTTGTTGCATTTGTGCTTAGGCATTTGGGTTTTAGAGAAGTTAAGGAAAACGCACATTGGTTTTCCACTTAGTTGGTGGTTACCAGAATTCTTTCAGGGATTCACATGGTTGTTAGTAGGTTTAACTGTAAGTCTTAAGCTGAACCAACTTCCAAGGGCATGGTTGTGGCCATTTAGTATTCTTATATTCTTTGTTTCTGGTTTTTTCTGTGCTTTATCCGTGTCTTACACAATTAGTAGCAGAGAACTGTCCCTCAAAGCAGCTTTGGATGTTCTATCTTTTCCTGGGGCAATTTTTCTACTCTTATGCGCATATAAAATAAGTAAATATGAAGACAATGATGGAGAAAATGAAGAATGTCTTTATGCCCCTTTAAGTGGCCAGTTAAATGAAGTTGATCCTAGTAGCCATGTAACTCCATTTGCCAAAGCTGGATTCTTTAGTAAGATTTCATTTTGGTGGTTGAGTCCATTGATGAAAGAGGGTCAAAAGAAAACACTTCAGGATGAGGATATCCCAAAGTTGCCGGAGTCAGATAGAGCAGAAAGCTGCTATTTGTCATTTGTAGATCAATTGAGCAGGCAGAAAAACAAGGAACCATTGTCACAAAAATCGTATTTGTGGGCAATAATTTTGTGCCATCAGAGAGAGATTTTGATGTCAGGACTTTTTGCATTGCTCAAGGTACTCACTCTGTCTGCTAGTCCTCTACTACTGAATGCCTTTATACTGGTCTCTGAGGGTAATGGAAGTTTCAAATATGAAGGTTATGCATTGGCCATCTCATTTTTAGTTACAAAGATTGTTGAATCCATATCACAAAGGCAGTGGTATTTCCGTAGCAGACTTGTTGGTATGAAGGTTAGGTCACAACTTACTGCAGCCATTTATAAAAAACAACTGAGATTATCCAATGCTGCTAGATTGATTCACTCTGGTGGTGAGATAATGAATTATGTGACTGTAGATGCTTATAGGGTTGGAGAATTTCCATTTTGGTTTCACCAAACGTGGACAATAATTGTCCAACTATGTATTGCGTTAGTCATTCTTTTTCATGCTGTTGGGCTAGCAACAATTGCCTCATTGGTGGTGATTGTTCTCACAGTGCTTTGCAATACTCCACTGGCAAAGTTACAGCATAAATTTCTGACCAAACTTTTGGTGGCACAAGATGAGAGATTGAAGGCTAGTTCGGAGGCTCTACTGAATATGAAAGTGTTGAAGTTATATGCATGGGAAATCCATTTTAGAAATGTTATAGAAAGCTTAAGAAATGTGGAACTCAAATGGTTATCTTCAGTGCTATTACAAAAAGCATACAACATCATTCTCTTTTGGTGTTCGCCTATTTTGGTATATGCTGCTTCCTTCACTGCATGTTACTTCTTAAAAATTCCTTTACATGCAAATAACCTTTTCACTTTTGTGGCAACTTTACGCCTCGTGCAAGATCCAATTTCTGTCATCCCAGATGTAATTGGAGTGGTCATTCAAGCAAAAGTTGCATTTACACGGATTGTAAAGTTCCTTGATGCACCAGAGCTGCAGAGTTCAAATGTCAGGAAAAGGTGCTTTAATGAGAAGCTCAAGGGTTCAATTTTAATCAAATCTGCAGACTTTTCATGGGAATGTAATGTGTCAAAGCCAACGCTGAGAAACATAGATTTAGAGGTTAGACCTGGGCAAAAGATTGCTATTTGTGGAGAAGTTGGCTCAGGAAAATCAACTCTCTTGGCAGCAATTCTTGGAGAAGTTCCTAACACTAAAGGAAATATTGCAGTTTATGGGAAGTTTGCTTATGTTTCTCAAACAGCATGGATACCAACAGGAACAATACAGGAAAATATTTTGTTTGGATCAGCTTTGGATGTTCAAAGGTATCAAGAGACACTTCATAGGTCTTCATTGGTGAAGGACCTTGAATTGTTTCCCCATGGTGAGTTTACTGAAATAGGAGAGAGAGGAGTTAACCTGAGTGGGGGTCAAAAGCAGCGAGTTCAACTTGCTCGTGCTCTTTATCAAAATGCTGATGTATATCTCTTGGATGATCCATTCAGTGCTGTTGATGCACATACTGCCACAAATTTGTTTAATGAATACATATTGGAAGGTCTTGCAGGGAAGACAGTCTTGCTGGTGACTCATCAAGTTGACTTTCTCCCAGCATTTGACTCTGTTTTGTTGATGTCAGATGGGAAAATCCTACAAGCTGCCCCTTATCCTCAATTAATGACCTCAAGCCAAGAATTTCGGGACCTTGTCAATGCTCACAAAGAGACTGCTGGTTCCGGTCAGCTTGCAGATGTTACTTCCATAGAGAGACATTCAAATTCTGGCAGAGAGATTAGTCAATGTTTCATAGAGAAGCAATTTAAACCATTAAATGGTGATCAATTAATAAAGCAAGAAGAGAGAGAAAGAGGTGACATAGGGTGGAAGCCTTACTTACAGTATCTGAATCGGAACAGAGGTTATATATACTTCTCTGTGGCTTCTTTGTCTCACCTAATGTTTGTGATCAGTCAGATATTGCAAAACTCATGGATGGCTGCTAATGTTGACAATCCCCAAGTCAGCACATTGCAATTGATTGTTGTTTACTTGCTGATTGGAGTTAGTTCTATAGTTTTCATGTTGATCAGAAGTCTTCTTGCAGTTGCTTTAGGCCTTCAATCATCAAAATATTTATTTTCACAGTTAGTGAACTCCCTTTTCCGTGCACCTATGTCATTTTATGACTCCACACCTTTGGGAAGGATACTTAGCAGGGTCTCATTGGATTTGAGCATTGTGGATCTTGATGTCCCATTTGTCCTCACTTATACTGTGGGATCTACTATAAACTGCTATGCTGATCTCGCAGTTTTGGCAGTCATCACCTGGCAAGTCTTGTTTGTGGCTATACCAATGGTTTATGTTGTTATCCGCTTGCAGAGACATTACTTTGCTGCTGCAAAAGAATATATGCGGATGAATGGCACAACAAAATCCTTTGTAGCTAATCATGTAGCTGAAACTGTTGCTGGAGCATTGACAATAAGGGCTTTTGAAGAGGAAGATCGTTTTTTTGTGAAGAATCTCAATCTAATAGATACCAATGCTAGTCCTTTCTTCCATAGTTTTGCTTCAAATGAGTGGTTGATCCTTCGATTAGAAACAGCCTGTGCAGTTGTTCTTGCCTCTGTGGCGCTTTGCATGGTTGTGCTTCCACCTGGGACTTTAACCTCTGGATTTATCGGCATGGCCCTTTCTTATGGCCTTTCACTAAGCGTTTCCTTAGTTTATTCAATTCAAAGTCAATGCATTCTAGCAAATCAAATAATATCTGTAGAGAGGCTAAATCAGTATATGCATATACCAAGTGAGGCCAAAGAAGTAATAGAAGGAAATCGCCCTCCTTTGAATTGGCCAGATGCAGGCAAAGTAGAAATACATGATCTGCAGATAAGATATAGGCAACAAGGGCCACTTGTACTCCATGGTATCACTTGCACTTTTGAAGGAGGGCACAAGATTGGTATTGTTGGCAGGACAGGCAGTGGGAAGTCCACTCTTATAGGTGCTTTATTCCGTCTCGTGGAGCCAGCAGGTGGAAAAATTGTAGTTGATGGCATAGACATCTCTTCTATCGGCCTTCATGACTTGAGGTCGCGTTTTTATATCATACCTCAGGATCCTACCCTTTTCAATGGGACAGTTAGATATAATCTGGACCCTTTATCTCAGCATTCTGATGAAGAGATATGGGAGGTTCTTGGTAAGTGTCAATTGCAAGAGGCAGTCCAGGATAAAGGTGGCTTAGACTCCTCAGTTGTTGAAGACGGATCAAACTGGAGCATAGGACAAAGGCAGTTATTCTGTTTGGGGCGTGCTCTTTTGAGGAGAAGTAAGATATTGGTGCTGGATGAAGCTACTGCGTCAATTGATAATGCAACCGATTTGATTCTGCAGAAAACCATTAGGACTGAGTTTGGAAATTGTACAGTAATCACTGTAGCCCACAGGATACCAACCGTGATGGATTGCACTATGGTTCTTGCCATCAGTGATGGAAAACTGGTGGAGTATGATGAGCCAATGAACTTGATGAAGAATGAAAAATCATTGTTTGGGCAGCTTGTTAAGGAATACTGGTCTCATTTTCAGTGTGCAGAATCACATTGA 4422 0.3989 MDDFWSMICGDSVCSETVGKPFCYDLRFLKDPSTCIIHLMIIFFDVLLLIMMAFVMIRKSSLRLFRVERYSNLQLVSAILNGSVGLLHLCLGIWVLEKLRKTHIGFPLSWWLPEFFQGFTWLLVGLTVSLKLNQLPRAWLWPFSILIFFVSGFFCALSVSYTISSRELSLKAALDVLSFPGAIFLLLCAYKISKYEDNDGENEECLYAPLSGQLNEVDPSSHVTPFAKAGFFSKISFWWLSPLMKEGQKKTLQDEDIPKLPESDRAESCYLSFVDQLSRQKNKEPLSQKSYLWAIILCHQREILMSGLFALLKVLTLSASPLLLNAFILVSEGNGSFKYEGYALAISFLVTKIVESISQRQWYFRSRLVGMKVRSQLTAAIYKKQLRLSNAARLIHSGGEIMNYVTVDAYRVGEFPFWFHQTWTIIVQLCIALVILFHAVGLATIASLVVIVLTVLCNTPLAKLQHKFLTKLLVAQDERLKASSEALLNMKVLKLYAWEIHFRNVIESLRNVELKWLSSVLLQKAYNIILFWCSPILVYAASFTACYFLKIPLHANNLFTFVATLRLVQDPISVIPDVIGVVIQAKVAFTRIVKFLDAPELQSSNVRKRCFNEKLKGSILIKSADFSWECNVSKPTLRNIDLEVRPGQKIAICGEVGSGKSTLLAAILGEVPNTKGNIAVYGKFAYVSQTAWIPTGTIQENILFGSALDVQRYQETLHRSSLVKDLELFPHGEFTEIGERGVNLSGGQKQRVQLARALYQNADVYLLDDPFSAVDAHTATNLFNEYILEGLAGKTVLLVTHQVDFLPAFDSVLLMSDGKILQAAPYPQLMTSSQEFRDLVNAHKETAGSGQLADVTSIERHSNSGREISQCFIEKQFKPLNGDQLIKQEERERGDIGWKPYLQYLNRNRGYIYFSVASLSHLMFVISQILQNSWMAANVDNPQVSTLQLIVVYLLIGVSSIVFMLIRSLLAVALGLQSSKYLFSQLVNSLFRAPMSFYDSTPLGRILSRVSLDLSIVDLDVPFVLTYTVGSTINCYADLAVLAVITWQVLFVAIPMVYVVIRLQRHYFAAAKEYMRMNGTTKSFVANHVAETVAGALTIRAFEEEDRFFVKNLNLIDTNASPFFHSFASNEWLILRLETACAVVLASVALCMVVLPPGTLTSGFIGMALSYGLSLSVSLVYSIQSQCILANQIISVERLNQYMHIPSEAKEVIEGNRPPLNWPDAGKVEIHDLQIRYRQQGPLVLHGITCTFEGGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKIVVDGIDISSIGLHDLRSRFYIIPQDPTLFNGTVRYNLDPLSQHSDEEIWEVLGKCQLQEAVQDKGGLDSSVVEDGSNWSIGQRQLFCLGRALLRRSKILVLDEATASIDNATDLILQKTIRTEFGNCTVITVAHRIPTVMDCTMVLAISDGKLVEYDEPMNLMKNEKSLFGQLVKEYWSHFQCAESH 1473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02468 1473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 842 IPR027417 -
Pumo6g02468 1473 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 584 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo6g02468 1473 FunFam ABC transporter C family member 10 602 855 - -
Pumo6g02468 1473 FunFam ABC transporter C family member 5 877 1209 - -
Pumo6g02468 1473 Gene3D ABC transporter type 1, transmembrane domain 291 593 IPR036640 GO:0005524|GO:0016020
Pumo6g02468 1473 Pfam ABC transporter 637 771 IPR003439 GO:0005524
Pumo6g02468 1473 Gene3D - 1212 1462 IPR027417 -
Pumo6g02468 1473 CDD ABCC_MRP_domain2 1226 1445 - -
Pumo6g02468 1473 Gene3D - 594 861 IPR027417 -
Pumo6g02468 1473 SUPERFAMILY ABC transporter transmembrane region 910 1208 IPR036640 GO:0005524|GO:0016020
Pumo6g02468 1473 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 922 1191 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo6g02468 1473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1218 1458 IPR027417 -
Pumo6g02468 1473 FunFam ABC transporter C family member 10 287 600 - -
Pumo6g02468 1473 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 621 842 IPR003439 GO:0005524
Pumo6g02468 1473 SMART AAA_5 646 819 IPR003593 GO:0016887
Pumo6g02468 1473 SMART AAA_5 1254 1445 IPR003593 GO:0016887
Pumo6g02468 1473 Gene3D ABC transporter type 1, transmembrane domain 877 1210 IPR036640 GO:0005524|GO:0016020
Pumo6g02468 1473 CDD ABC_6TM_ABCC_D2 910 1203 IPR044726 GO:0140359
Pumo6g02468 1473 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 226 1461 - -
Pumo6g02468 1473 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1228 1461 IPR003439 GO:0005524
Pumo6g02468 1473 FunFam ABC transporter C family member 3 1211 1462 - -
Pumo6g02468 1473 Pfam ABC transporter transmembrane region 914 1169 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo6g02468 1473 Pfam ABC transporter transmembrane region 304 568 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo6g02468 1473 CDD ABCC_MRP_domain1 619 819 - -
Pumo6g02468 1473 ProSitePatterns ABC transporters family signature. 744 758 IPR017871 GO:0005524|GO:0016887
Pumo6g02468 1473 CDD ABC_6TM_ABCC_D1 306 592 IPR044746 GO:0140359
Pumo6g02468 1473 SUPERFAMILY ABC transporter transmembrane region 292 599 IPR036640 GO:0005524|GO:0016020
Pumo6g02468 1473 Pfam ABC transporter 1245 1392 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02468 Pumo-Chr6 55956516 55964974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02468 570 830 Calmodulin-binding Proteins AT2G36910 27.338 3.61e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02468 K05666 - gmx:100787314 2274.59