Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02462 ATGACCCGGAGAAAGATGAAACTCGCATTCATAGCCAATAATTCTAAAAGGAAGGCATCATACAAGATAAGGAAGCAGTCACTGCTGAAGAAGACGGAGGAACTCACCACCCTGTGTGGAATTGAAGCATGTGCTATAGTTTATAGCCCCTATGATCATGAGCCACAGATTTTGCCATCCGAATCGGGTGTCCAAAATGTGCTGCGAAAGTTCATGACTGTTCCTGAATGGGAGAGAACAACAAGATGGCGAACCAAGAGAGCTTCATTGCACAAACTATTGTGA 285 0.4421 MTRRKMKLAFIANNSKRKASYKIRKQSLLKKTEELTTLCGIEACAIVYSPYDHEPQILPSESGVQNVLRKFMTVPEWERTTRWRTKRASLHKLL 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02462 94 PANTHER MADS BOX PROTEIN 3 78 - -
Pumo6g02462 94 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Pumo6g02462 94 SUPERFAMILY SRF-like 1 81 IPR036879 GO:0003677|GO:0046983
Pumo6g02462 94 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pumo6g02462 94 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Pumo6g02462 94 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo6g02462 94 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02462 Pumo-Chr6 53244165 53244449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02462 1 79 Type I MADS-box Gene Family AT5G48670 59.494 1.29e-25 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo6g02462 SRF-TF 4.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02462 - - gmx:100794935 107.842