LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo6g02453	ATGGCTGGGGAAGCAACTTTTCACTACGATGTGTACATCAGCTTCAGAGGTGCGGATACACGGATGGGTTTTGCTTCACATCTCTCCAATGCTCTCATTCAAAGGAGTTTCCATGTCTTCATTGATGATATGTCTCTCCAAAGGGGAGAGGAAATCTGGCCAGCAATTTCCAAGGCAATTGAAGGATCCAGGATTGCAATTATTTTGTTCTCTCAGAACTACGCTTCTTCTACGTGGTGTTTAGAAGAACTCGCCTTCATCGTTGACCGCATTCAGGAGAAGAAGCCTAGGCTTGTTTTACCTGTTTTTTATGGTGTCGATCCTTCAGATGTGCGACATCAGAGAGGGAGTTATGGAGAAGCATTGGCCTGGCATGAGGAGAGGTTCAAGGATGACATAGAGAAGGTCAAAAGATGGAAGGTGGCTCTGACTTGCGCAGCTAACTTAACTGGTTTCCATTTCCAGTTTGGGTATGAATATGAATCTGAATTTATTGCGAGGATCATTGATGTAGTCTCAAATCAGATTAATGTCCGACTTCGCGTTCCTTTACATGTTGCTGATTACCCAGTTGGATTGGAGTCTCGAATGCTTAAAGTAACGTCGCTTCTGAATGTTGAGACTGATGATGGAGTCCGCATGGTAGGGATCCATGGTACTGGTGGAATTGGCAAAACTACAATTGCCCGGGCAGTATTTAATTCCATCAGTGACCAATTTGAATGCTCGTATTTTCTTGAAGATGTGAGAGTGAATTCAGCTAAACATGGCTTAGTACATCTCCAAGAGATGGTTCTCTCTGCAATACTTGGAGACATGAATATTGACTTACGAAATGTGAATCAAGGAATTTTGGAAATAAAGGAAAGGCTGAGAAGGAAAAAGGTTCTTTTGGTTCTTGACGATGTTGACAAAATAGAGCAGCTGCAGGCTGTTGTAGGAGGACTTGGTTGGTTTGGTTCTGGCAGCAGGGTTATCATTACAACTCGGGAGGAGCGTTTGCTGGCATTGCATAGGGTTGAAAGCTCATATAGGGTGGAGGAACTAAGTGACAAAGAAGCTCTTTCTTTGCTTACTTGGAATGCTTTCAAAACTGACAAAGTTGATCCAAGTTACACAGACATGTTAAACCGTGCAGTGACTTATGCTTCTAGGCTTCCATTGGACTTGCAAGTAATGGGTTCCTACTTATTTGGAAAAAGTATAGATGAATGGAATGAAGCATTAAACCAGTATGAAGAGATTTCTGATAAGGAGATCCATATGAAACTTAAACTAAGCTTTGATTCCTTGGAGGAAGATGAGAAAGGCATTTTTCTTGACATTGCTTGTTTCTTCAATGGACAAAAATTGACAGACATTGAAGATATACTTTGTGCTCATCATGGTTTATCCACAAAAATTAGTATTGAGGCATTGGTTGCAAAATCTCTCATAAACATTGATGATGGTCTTGTGATATTACATGACTTGATACAAGACATGGGTAGAGAAATTGTTCAACAGGAATCACGATATGAACCTGGGAAACGTAGTAGGTTATGGTTCTTTAAAGATGTAGTTCAAGTTCTAGAACAAAATGCGGGATCAAGTACAATTGAAAGCATATTTCTGGATTTCCCCAAAGATGATGGACCCAAAGGTGAAAGAGTGCATTGGGATGGAGAGGCCTTCAAGAAGATGAAAAACCTCAAAACACTTATTATTAGAAATGGTCATTTTAACAAAGGCCCCGCACATCTTCCTCCAAGTTTAAGAGTGCTGAAATGGTGGGGATATCCATCACCATCTTTACCTGATGATTTTCATCCAAAGAAGCTTGCCATACTCGAATTACCAGAAAGTTGCTTAAGGATAAGTGCACCAATTCAGGGGTTTGTGTGTCTGACAGTTTTGGATTTTGGCTACTGTGAACGGATAACTTGTATACCTGATGTATCTGGCCTCCCAAATTTAGAAAAATTATCTTTTAAACACTGTGAGAATTTAAGTGAAATTCACCAATCAGTTGGATTTCTAGATAAACTTAGAATCTTGGATGCTGTTTGTTGCAAGAAACTTAGGACTTTTCCACCCATCAGAATGACCTGTCTTGAACAATTCAATCTTTCCCATTGCTCAATTCTTGAGGGTTTCCCAGAAATATTGGGGAAGATGGAAAATATAATGGAACTTCATATAACTGGGAGTCCCATAAAAGAATTGCCATTCTCAATTCAAAACCTTACTCGGCTTCAAAAACTAGAACTGCAACTCTGTGGAATGGTTTGGATACCAAGTAGCATTGTCATGTTGTCCAGAACTGGGTTTGATGTGTGTTTCACAATGTGA	2331	0.4011	MAGEATFHYDVYISFRGADTRMGFASHLSNALIQRSFHVFIDDMSLQRGEEIWPAISKAIEGSRIAIILFSQNYASSTWCLEELAFIVDRIQEKKPRLVLPVFYGVDPSDVRHQRGSYGEALAWHEERFKDDIEKVKRWKVALTCAANLTGFHFQFGYEYESEFIARIIDVVSNQINVRLRVPLHVADYPVGLESRMLKVTSLLNVETDDGVRMVGIHGTGGIGKTTIARAVFNSISDQFECSYFLEDVRVNSAKHGLVHLQEMVLSAILGDMNIDLRNVNQGILEIKERLRRKKVLLVLDDVDKIEQLQAVVGGLGWFGSGSRVIITTREERLLALHRVESSYRVEELSDKEALSLLTWNAFKTDKVDPSYTDMLNRAVTYASRLPLDLQVMGSYLFGKSIDEWNEALNQYEEISDKEIHMKLKLSFDSLEEDEKGIFLDIACFFNGQKLTDIEDILCAHHGLSTKISIEALVAKSLINIDDGLVILHDLIQDMGREIVQQESRYEPGKRSRLWFFKDVVQVLEQNAGSSTIESIFLDFPKDDGPKGERVHWDGEAFKKMKNLKTLIIRNGHFNKGPAHLPPSLRVLKWWGYPSPSLPDDFHPKKLAILELPESCLRISAPIQGFVCLTVLDFGYCERITCIPDVSGLPNLEKLSFKHCENLSEIHQSVGFLDKLRILDAVCCKKLRTFPPIRMTCLEQFNLSHCSILEGFPEILGKMENIMELHITGSPIKELPFSIQNLTRLQKLELQLCGMVWIPSSIVMLSRTGFDVCFTM	776

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo6g02453	776	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	9	756	IPR044974	GO:0006952
	Pumo6g02453	776	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	152	IPR035897	-
	Pumo6g02453	776	Gene3D	Ribonuclease Inhibitor	554	693	IPR032675	-
	Pumo6g02453	776	Gene3D	Ribonuclease Inhibitor	694	768	IPR032675	-
	Pumo6g02453	776	Gene3D	-	176	342	IPR027417	-
	Pumo6g02453	776	ProSiteProfiles	TIR domain profile.	7	176	IPR000157	GO:0007165
	Pumo6g02453	776	FunFam	Disease resistance protein (TIR-NBS-LRR class)	5	178	-	-
	Pumo6g02453	776	Pfam	NB-ARC domain	197	418	IPR002182	GO:0043531
	Pumo6g02453	776	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	178	442	IPR027417	-
	Pumo6g02453	776	Gene3D	-	7	175	IPR035897	-
	Pumo6g02453	776	SUPERFAMILY	L domain-like	552	763	-	-
	Pumo6g02453	776	PRINTS	Disease resistance protein signature	214	229	-	-
	Pumo6g02453	776	PRINTS	Disease resistance protein signature	383	397	-	-
	Pumo6g02453	776	PRINTS	Disease resistance protein signature	647	663	-	-
	Pumo6g02453	776	PRINTS	Disease resistance protein signature	290	304	-	-
	Pumo6g02453	776	Gene3D	-	348	432	IPR042197	-
	Pumo6g02453	776	Pfam	TIR domain	9	173	IPR000157	GO:0007165
	Pumo6g02453	776	SUPERFAMILY	"Winged helix" DNA-binding domain	419	525	IPR036390	-
	Pumo6g02453	776	SMART	till_3	8	149	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo6g02453	Pumo-Chr6	52114070	52117356	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo6g02453	9	751	WRKY Transcription Factor Family	AT4G12020	32.245	2.12e-85	295

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo6g02453	-		-	mtr:25501119	896.345