LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo6g02451	ATGGCTAAGGAAGCATCCTTTTCCTACGATGTATTCCTCAGCTTCAGAGGAGAAGACACGCGAATGGGTTTTACTGGAAGCCTCAACCATGCTCTGGGTCAGAGGGGAATCCGTACCTTCTTTGACGACACGGAGCTTCGAAAAGGAGAGGAACTGACCCCAGCACTTTCCAAGGCAATTCAACAATCAAGGATTGCCATCGCTGTGCTCTCTCAGAATTATGCTTTTTCCTCCTTTTGCTTGGATGAACTCGCTACCATCCTTGACTGCTTCCAGGAGAAGAAGCAGCCCAGGCTTGTTTTACCTGTCTTTTACGGCGTCGATCCCTGCGACGTGCGACATCTGAGAAAGAGTTACGGAGAAGCATTTGCTAAGCACGAGGAGAGGTTCAAGAATGACAAGGACAAGTTCAAAGATAGCAGGGAGAAGTTCAAGTTCGAAGAGAAGATCAAGAAATGGAAGGAGGCTCTTCATATGGCAGCTAATCTGTCTGGCTTTCCTTATAATCATGGGGATGGATACGAATATGAATTTATTTGGAGGATCTTGAAGGAAGTCTCTACGAAGATTAATCGTACTCTTTTACATGTTGCTAAATACCCAGTTGGATTGGAGTCTAGAGTGCGTGAAGTAAACTCCCTTCTAAATGTTGAGTCTGAATCTGACAGTGTCGTCTACATGGTTGGGATCCATGGGATCGGTGGAATTGGTAAAAGTACAATTGCTCGAGCTGTATATAATTCCATTAGTGATCACTTTGAAGGCTTGTGTTGTTTTCTTGATGATGTGAGAGTGAATTCAGTTAAATATGGCTTAGTACATCTCCAAGAGGCCATTCTTTCTGTGATTCTTGGAGACAAGGATACTCGACTACAGAATGTGAACGAAGGAATATCAACACTTAGGCAAAGGCTCCAGAAGAAGAAGGTTCTTTTGGTTCTTGACAATGTTGACAAAATAGAGCAGCTTGAGGCTATTGTAGGAGGACTTGATTGGTTTGGTTCTGGCAGCAGAGTCATCATTACAACTCGGGAGGTGCGTTTGCTGCAACTGCATGGAATTAAAAAGACATATCCAGTGCAGGAATTAAGTGACACAGAAGCTATTGATTTGCTTAGATGGAATGCTTTCAAAACTGACAAAATTGATCCAAGATACACAAACATTTTAAACCGTGCAGTCACTTATGCTTCTAGGCTTCCGTTGGCTTTGGAAGTAATAGGTTCCAACTTATTTGGAAAAGGAGAGGAGGAATGCAAACTTATATTAGATCGATATGACAAAATTATTGATAAAAAGATCCAAGATGTACTTAAAGTAAGTTTTGATTCCTTGGAGGAAGAGGAGAAGAAAGTTTTTCTTGACATTGCTTGTTGCTTTGGAGGATTCAAATTGTCAGATGTTGAAAATATACTTCATGCCCATCATGGTTCATCAGTGAGACTTAGTATTGAACTGTTGATTGAAAAATCTCTCATAAAAATTGATGATGGTCTTCTGACATTACATTCGTTGCTACAAGACATGGGTAGAGAAATCGTGCGAGAGGAATCACAACAAGAGCCTTGTGAACGTAGTAGGTTATGGTTCTATGAAGATGTAGTTCAAGTTTTAGAAGAAAATAAGGGAACTAGCAAAATTCAAATCTTGATTCTGGATTTCCCCAAAGATAGAGTACACTTGAAAGGACGTGAAGGTGAAGAAGTGCATTGGGATGGAGAGGCCATCAAGGAGATGAAAAACCTCAAAACCCTTATTATTAGAAATGGTCATTTTTTCAAAGGCCCCACACATCTTCCTAATAGTTTAAGAGTGTTGAAATGGTCAAGATATCCTTCACCATCTTTACCATGTAGTTTTAATCCAAGGAGACTCTCCATTCTTGAGTTACAAGACAGTTTCTTAAAGCAGTGTGAACCAATCCAGATGTTGCAATGTTTGACAGTTTTGGATTTCAGCTATAGTGATTACATAACTGAGATACCTGATGTAACTGGCATCAAAAAGTTAGAAAAATTATCATTTAAACATTGTGAGAATTTAACTAAAATACACGATTCAGTTGGATACCTGGAAAATCTTAAAATCTTGGATGCTTCTAGTTGCAAGAATCTTAAGGCTTTTCCACCCATTAAATTGATATCTCTTACACAACTCAATCTTTCACATTGCTCAAAGCTTGAGGTTTTCCCAGAAATATTGGGGAAGATGGAAAATATAACAGAACTTCATATAACTGGGAGTCCCATAAAAGAATTGCCATTTTCCATTCAAAACCTTACTCGGCTTCGAAAATTAGAACTGCAACTCTGTGGAATTGTTTGGATACCAAGTAGCATTGTCATGTTGCCAGAACTGGGTTCAATGTGTGTTTCGCAATGTGAAGGGTTGCAGTTATCTATTCTGGACAAAGGTGAGAAAATGGTGTCCAAGTCTTCAAACATGGAGTGTCTTGTTCTGTCGTACTGCAATATATTAGATGACTTCTTTCCAACAGGTCTCACTTTGTTTGCCAATGTGAAAGATTTAAACCTGTCCGGGAATAATTTTACAGTTCTTCATGCATGCTTCGATGAATGTCACCTTTTGAGGAACCTTAAGCTGGATGACTGCAAATCCCTAAAAGAAATTAGAGGGATTCCAGTGAAATTAGAAACATTGTCTGTGGAAGGATGCAGGACCTTAAAATTCTTAGACCTTACAGTTCTTCCTGCATGCACTGAAGAATGTCACTCTTTGAGGGAGCTGGTTTTGGATGATTGTCTGTTTCTTCAAGAAATTAAAGGGGTTCTACCAAACTTGGATCACTTCTCTGCAAAAAACTGCACATCCCTGTCATCCACCTGTACAAGCATGTTGCTGAATCAGGTTCCTCTTTTTATCCCAATTTCATTTAATTCAATATTTATGTTGACTCTTGGTCCAAAAAAAAAAAAAAATATTTATGTTGACTCAAGCGATGCATAA	2967	0.3923	MAKEASFSYDVFLSFRGEDTRMGFTGSLNHALGQRGIRTFFDDTELRKGEELTPALSKAIQQSRIAIAVLSQNYAFSSFCLDELATILDCFQEKKQPRLVLPVFYGVDPCDVRHLRKSYGEAFAKHEERFKNDKDKFKDSREKFKFEEKIKKWKEALHMAANLSGFPYNHGDGYEYEFIWRILKEVSTKINRTLLHVAKYPVGLESRVREVNSLLNVESESDSVVYMVGIHGIGGIGKSTIARAVYNSISDHFEGLCCFLDDVRVNSVKYGLVHLQEAILSVILGDKDTRLQNVNEGISTLRQRLQKKKVLLVLDNVDKIEQLEAIVGGLDWFGSGSRVIITTREVRLLQLHGIKKTYPVQELSDTEAIDLLRWNAFKTDKIDPRYTNILNRAVTYASRLPLALEVIGSNLFGKGEEECKLILDRYDKIIDKKIQDVLKVSFDSLEEEEKKVFLDIACCFGGFKLSDVENILHAHHGSSVRLSIELLIEKSLIKIDDGLLTLHSLLQDMGREIVREESQQEPCERSRLWFYEDVVQVLEENKGTSKIQILILDFPKDRVHLKGREGEEVHWDGEAIKEMKNLKTLIIRNGHFFKGPTHLPNSLRVLKWSRYPSPSLPCSFNPRRLSILELQDSFLKQCEPIQMLQCLTVLDFSYSDYITEIPDVTGIKKLEKLSFKHCENLTKIHDSVGYLENLKILDASSCKNLKAFPPIKLISLTQLNLSHCSKLEVFPEILGKMENITELHITGSPIKELPFSIQNLTRLRKLELQLCGIVWIPSSIVMLPELGSMCVSQCEGLQLSILDKGEKMVSKSSNMECLVLSYCNILDDFFPTGLTLFANVKDLNLSGNNFTVLHACFDECHLLRNLKLDDCKSLKEIRGIPVKLETLSVEGCRTLKFLDLTVLPACTEECHSLRELVLDDCLFLQEIKGVLPNLDHFSAKNCTSLSSTCTSMLLNQVPLFIPISFNSIFMLTLGPKKKKNIYVDSSDA	988

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo6g02451	988	Gene3D	-	7	189	IPR035897	-
	Pumo6g02451	988	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	9	866	IPR044974	GO:0006952
	Pumo6g02451	988	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	166	IPR035897	-
	Pumo6g02451	988	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	191	456	IPR027417	-
	Pumo6g02451	988	Gene3D	-	362	446	IPR042197	-
	Pumo6g02451	988	PRINTS	Disease resistance protein signature	689	705	-	-
	Pumo6g02451	988	PRINTS	Disease resistance protein signature	227	242	-	-
	Pumo6g02451	988	PRINTS	Disease resistance protein signature	397	411	-	-
	Pumo6g02451	988	PRINTS	Disease resistance protein signature	304	318	-	-
	Pumo6g02451	988	Pfam	NB-ARC domain	208	414	IPR002182	GO:0043531
	Pumo6g02451	988	SUPERFAMILY	L domain-like	570	895	-	-
	Pumo6g02451	988	FunFam	Disease resistance protein (TIR-NBS-LRR class)	5	192	-	-
	Pumo6g02451	988	SUPERFAMILY	"Winged helix" DNA-binding domain	432	539	IPR036390	-
	Pumo6g02451	988	Gene3D	-	190	355	IPR027417	-
	Pumo6g02451	988	Gene3D	Ribonuclease Inhibitor	572	714	IPR032675	-
	Pumo6g02451	988	Gene3D	Ribonuclease Inhibitor	715	957	IPR032675	-
	Pumo6g02451	988	ProSiteProfiles	TIR domain profile.	7	190	IPR000157	GO:0007165
	Pumo6g02451	988	Pfam	TIR domain	9	155	IPR000157	GO:0007165
	Pumo6g02451	988	SMART	till_3	8	163	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo6g02451	Pumo-Chr6	52067132	52071687	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo6g02451	5	818	WRKY Transcription Factor Family	AT4G12020	30.130	3.14e-75	270

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo6g02451	-		-	mtr:25501119	1218.76