Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02448 ATGATGGCCTCTCACATCCCTCAATGCTTGCTTTTGGCTATTATGATTGTTTTCTTTTTCAATTCAAGCCTTAGTTTTGCGAAGCAATCCAAGATAAATGGCTTGAAAATGAATTTTATTGATCGATGTTGGAGACCAAATCCTGAATGGAGGAAACATCGATCTCAATTAGCCACATGTTCCGTGGGCTATGCTGGCAAGATGAAAAATAACATTGGTAAGGACCTTATCTATTATAAAGTTACTGACCCTAGTGATGATCCTATAAACCCTAAACTCGGCACGTTGAGGTATGGAGCTTCCGTGATTCAAGGTAAAGTGTGGATCACATTCCAAAGAGACATGCACATTAAATTACAGAAACCCCTTCTCATTAGTAGTTTCACCACCATTGATGGTCGAGGTGTTAACGTCAACATTAGTAATAATGCATGCTTAATGATCTTCAAGGCCACCAACATAATCATCCATGGCATTCGGGTTCATGATTGCAAACCTCAAGCCCCTGGGATCGTGATGGGGCCCGAAGGAAAGTTGATTCCTTTAGGCCACGTAGATGGGGATGCAATTAGATTGGTTACTGCTTCAAAGATTTGGATTGATCATAATACACTTTATGATTGCCAAGATGGTCTGCTTGACGTAACGCGAGGTTCCACTTATGTGACTATATCCAATAATTGGTTCAAAAACCAAGACAAGGTTATGCTTCTTGGGCATGATGATGGATATGTGAGAGACAAAAATATGAAGGTTACCGTTGTGTACAACCTTTTTGGACCTAATTGCAATCAACGCATGCCAAGGATTCGCCATGGATATGCACATGTGGCCAACAATCTTTATCAGGGATGGGTGCAATATGCCATTGGTGGAAGCATGGAACCTAGTCTCAAAAGCGAAGCTAACCTCTTCATAGCACCAACAATAGGGAGTAAAGAGGTGACTTGGAGAAAGAGTAGTCATAAAAATGGGGATAGATGGGAATTTCATTCAGTGAAGGACACATTTGAAAATGGAGCCTCCTTTGCGGTAACGAAAGAAGGACGTGTGCCAAAGCCAAATTATAACAAGGAACAGAGTTTTAAAATTGTTGATGCCAAATTTGTGAGATCATTGACACGCTCATCAGGCGTGTTACGATGCAATAAAACATCTATATATTGA 1167 0.4062 MMASHIPQCLLLAIMIVFFFNSSLSFAKQSKINGLKMNFIDRCWRPNPEWRKHRSQLATCSVGYAGKMKNNIGKDLIYYKVTDPSDDPINPKLGTLRYGASVIQGKVWITFQRDMHIKLQKPLLISSFTTIDGRGVNVNISNNACLMIFKATNIIIHGIRVHDCKPQAPGIVMGPEGKLIPLGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTYVTISNNWFKNQDKVMLLGHDDGYVRDKNMKVTVVYNLFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMEPSLKSEANLFIAPTIGSKEVTWRKSSHKNGDRWEFHSVKDTFENGASFAVTKEGRVPKPNYNKEQSFKIVDAKFVRSLTRSSGVLRCNKTSIY 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02448 388 Gene3D - 37 381 IPR012334 -
Pumo6g02448 388 PRINTS Pollen allergen Amb family signature 85 110 IPR018082 -
Pumo6g02448 388 PRINTS Pollen allergen Amb family signature 288 307 IPR018082 -
Pumo6g02448 388 PRINTS Pollen allergen Amb family signature 328 352 IPR018082 -
Pumo6g02448 388 PRINTS Pollen allergen Amb family signature 359 382 IPR018082 -
Pumo6g02448 388 PRINTS Pollen allergen Amb family signature 186 207 IPR018082 -
Pumo6g02448 388 PRINTS Pollen allergen Amb family signature 266 285 IPR018082 -
Pumo6g02448 388 PRINTS Pollen allergen Amb family signature 122 138 IPR018082 -
Pumo6g02448 388 PANTHER PECTATE LYASE 18-RELATED 34 385 IPR045032 GO:0030570
Pumo6g02448 388 SMART amb_all 114 311 IPR002022 -
Pumo6g02448 388 Pfam Pectate lyase 123 305 IPR002022 -
Pumo6g02448 388 SUPERFAMILY Pectin lyase-like 31 381 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02448 Pumo-Chr6 51626112 51627611 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02448 68 315 Polysaccharide Lyase AT5G09280 73.387 3.93e-143 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02448 K01728 - gmx:100780437 682.945