Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02447 ATGATGGCCTCTCACATCCCTCAATGCTTGCTTTTGGCTATTATGATTGTTTCCTTTTTCAATTCAAGCCTTAGTTTTGCGAAGCAATCCAAGATAAATGGCTTGAAAATGAATGTTATTGATCGATGTTGGAGACCAAATCCTGAATGGAGCAAACATCGATCTCAATTAGCCACATGTTCCGTGGGCTATGCTGGCAAGATGACAAACAACATTGGTAAGGACCTTATCTATTATAAAGTTACTGACCCTAGTGATGATCCTATAAACCCTAAACTCGGCGCGTTGAGGTATGGAGCTTCCGTGATTCAAGGTAAAGTGTGGATCACATTCCAAAGAGACATGCACATTAAATTACAGAAACCCCTTCTCATTAGTAGTTTCACCACCATTGATGGTCGAGGTGTTAACGTCAACATTGGTAATAATGCATGCTTAATGATCTTAAAGGCCACCAATATAATCATCCATGGCATTCGGGTTCATGATTGCAAACCTCAAGCCCCTGGGATCGTGATGGGGCCCGAAGGAAAGTTGATTCCTTTAGGCCATGTAGATGGGGATGCAATTAGACTGGTTACTGCTTCAAAGATTTGGATTGATCATAATACACTTTATGATTGCCAAGATGGTCTGCTTGACGTAACGTGA 651 0.4132 MMASHIPQCLLLAIMIVSFFNSSLSFAKQSKINGLKMNVIDRCWRPNPEWSKHRSQLATCSVGYAGKMTNNIGKDLIYYKVTDPSDDPINPKLGALRYGASVIQGKVWITFQRDMHIKLQKPLLISSFTTIDGRGVNVNIGNNACLMILKATNIIIHGIRVHDCKPQAPGIVMGPEGKLIPLGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVT 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02447 216 Gene3D - 37 216 IPR012334 -
Pumo6g02447 216 PANTHER PECTATE LYASE 18-RELATED 32 216 IPR045032 GO:0030570
Pumo6g02447 216 PRINTS Pollen allergen Amb family signature 60 77 IPR018082 -
Pumo6g02447 216 PRINTS Pollen allergen Amb family signature 122 138 IPR018082 -
Pumo6g02447 216 PRINTS Pollen allergen Amb family signature 186 207 IPR018082 -
Pumo6g02447 216 SUPERFAMILY Pectin lyase-like 37 215 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02447 Pumo-Chr6 51321124 51321884 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02447 68 216 Polysaccharide Lyase AT5G09280 68.456 1.93e-75 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02447 K01728 - gmx:100780437 371.318