Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02446 ATGCTTCTTGGGCATGATGATGGATATGTGAGAGACAAAAATATGAAGGTTACCGTTGTGTACAACCATTTTGGACCTAATTGCAATCAACGCATGCCAAGGATTCGCCATGGATATGCACATGTGGCCAACAATCTTTACCAAGGATGGGTGCAATATGCCATTGGTGGAAGCATGGAACCTAGCCTCAAAAGCGAAGCTAACCTCTTCATAGCACCAACAATAGGGAGTAAAGAGGTGACTTGGAGAAAGAGTAGTCATAAAAATGGGGATAGATGGGAATTTCATTCAGTGAGGGACGCATTTGAAAATGGAGCCTCCTTTGCGGTAACAAAAGGAGGACGTGTGCCAAAGCCAAATTATAGCAAGGAACAAAGTTTTAAAGTTGTTGATGCCAAATTTGTGAGATCATTGACACGCTCATCAGGCGTGTTACGATGCAATAAAACCTCTATATATTGA 462 0.4199 MLLGHDDGYVRDKNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMEPSLKSEANLFIAPTIGSKEVTWRKSSHKNGDRWEFHSVRDAFENGASFAVTKGGRVPKPNYSKEQSFKVVDAKFVRSLTRSSGVLRCNKTSIY 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02446 153 Gene3D - 1 146 IPR012334 -
Pumo6g02446 153 PANTHER PECTATE LYASE 18-RELATED 1 150 IPR045032 GO:0030570
Pumo6g02446 153 Pfam Pectate lyase 1 70 IPR002022 -
Pumo6g02446 153 PRINTS Pollen allergen Amb family signature 31 50 IPR018082 -
Pumo6g02446 153 PRINTS Pollen allergen Amb family signature 93 117 IPR018082 -
Pumo6g02446 153 PRINTS Pollen allergen Amb family signature 53 72 IPR018082 -
Pumo6g02446 153 PRINTS Pollen allergen Amb family signature 124 147 IPR018082 -
Pumo6g02446 153 SUPERFAMILY Pectin lyase-like 1 146 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02446 Pumo-Chr6 51320362 51321069 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02446 1 80 Polysaccharide Lyase AT5G09280 81.250 4.02e-46 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02446 K01728 - gmx:102664202 291.197