Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02442 ATGGCAGATCTTGCTAGCTACGGGAATGCCAACCGTGACATTGAACAAGCATTGATTGCTTTGAAAAAGGGTGCTCAACTTCTTAAATATGGTCGTAAAGGAAAGCCCAAGTTTTGTCCATTTAGACTTTCCAATGATGAATCATCCTTAATCTGGATTACAAGTAGTGGAGAAAGAAATCTGAAGCTATCTTCTGTCTCTAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGTTACTTGCGTCCTGAGAAGGACTATTTGTCTTTTTCACTTATTTACAGTAACGGAAAGCGATCGCTTGATTTGATTTGCAAAGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGCCTCAAAGCGCTGATATCTTCTGGTCAAGGTGGTCGTTCCAAAATTGATGGATGGAGTGATGGGGGCCTCATTCTTGATGATAGCAGAGACTTAACATCAAATAGTCCAAGTGAAAGTTCTGCTAGCACGTCAAGAGGCATCAGTTCTCCTGACATTTCTGCGACTCTTCCAAATACTTCACCAAAGTCCTTTCAGCCTGACAATACAATTTCTGAAAGGTCACATGCGCCACCAGACCCAACAAACATGCAAGTGAAAGGATCTGCTTCAGATGCTTTTCGTGTCAGTGTTTCAAGTGCCCCCAGTACATCTAGTCATGGATCTGCACCTGATGACTATGATGCTCTGGGGGATGTATACATATGGGGAGAGGTTATCTGTGAAAATGTTAAAGTTGGTGCTGATAAAAATGTAAATTATTTCAGCCCGAGGGCAGATGTACTTCTCCCCAGACCACTGGAATCCAATGTAGTTTTAGATGTACATCATATAGCATGTGGTGTTAGACATGCTTCTCTAGTCACTAGGCAAGGTGAAGTTTTTACATGGGGTGAAGAATCAGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTAGAAGCATTGACTTCTACAACTGTTGATTTTGTTGCCTGTGGGGAGTTCCATTCCTGTGCTGTTACAATGGCTGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGCAGTGATGTCAGTCATTGGATACCAAAGAGAATTGCTGGTCCATTAGAGGGACTTCAAATTGCATTTGTTGCTTGTGGTCCATGGCACACAGCCTTGATAACTTCAACAGGGCAGCTGTTTACATTTGGTGATGGAACATTCGGTGTCTTGGGCCATGGAGATAGGGGAAATGTTTCATATCCTAGAGAAGTGGAATCCTTATCAGGATTGAGGACAGTAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTTGTAGAGGTTATCGCAACACACTCCGGTACAAGCATATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGGGACAAGGAGGCACGTCTTAAACCAACTTGTGTGCCTGCACTTATTGATTACAATTTTCATAAAATTGCTTGTGGGCACAGTTTGACAGCAGGCCTGACAACATCTGGACGTGTTTTCACTATGGGAAGTACTGTTTATGGTCAGCTTGGGAATCCTCAATCCGATGGAAAGCTTGCATGCTTGGTCGGAGACAAGATTGCCGGGGAATCTGTTGAAGAAATTGCATGTGGTGCATATCATGTAGCTGTATTAACATCCAAAAATGAAGTTTATACTTGGGGGAAAGGTGCAAATGGGAGATTGGGTCATGGAGATATTGAAGATCGTAAAACACCGGCTTTGGTTGAAGCATTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACACTGCTGCCATATGCCTTCATAAGTGGGTATCTGGTGCTGAGCAGTCTCAGTGCTCTACTTGTAGACAGGCATTTGGTTTCACTAGAAAGAGGCACAATTGTTATAACTGTGGACTTGTCCACTGCCATTCGTGCAGTTCACGGAAAGCATTAAGAGCAGCACATGCTCCTAATCCTGGCAAGCCGTATCGTGTGTGTGATTCTTGTTATGCAAAATTGAACAAGGTTGCTGAAGCTAGCAATAGTAATAGAAGGAATGTGTTGCCTCGTCTGTCAGGTGAGAACAAGGATAGGCTAGACAAGTCTGACCTAAGATTGTCCAAGGCAGTAATTCCTTCTAACATGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCCAAGCAAGGAAAGAAAGGTGATACATTCTCACTGGTTCGCCCATCACAACCGCCTTTGTTACAGCTGAAAGATGTTGTTTTGTCCACTGCTCTTGATCTGAGACGAACAGTTCCAAGACCAGTGGTTGCACCATCAGGAGTAAGTTCCAGATCTGTGTCCCCTTTCTCTAGAAGACCAAGCCCCCCTCGTTCAGCTACGCCTATTCCAACAACTTCAGGACTTTCCTTTTCAAAAAGTATTGCTGATAGTTTGAAGAAAACAAATGAACTTTTAAATCAAGAAGTGCAGAAGTTGCATGCTCAGGTTGAGAGCCTGAGACAGAGATGTGAACTGCAAGAATTAGAGCTTCAAAGGTCAGCAAAAAAGACTCAAGAAGCTATGGCACTGGCTGCTGAGGAATCTGCTAAATGTAAAGCTGCAAAAGAAGTTATTAAGTCACTCACAGCACAGCTCAAAGATCTGGCTGAGAAGCTTCCTCCTGGAGTGTATGATGCTGAGAACATCAGACCAGCTTACCTACCAAATGGTCTTGAGCCAAATGGCATCCACTATCCAGATTCAAATGGCGAGCAGCACACCAGGGCAGAGTCAATCAGTGGCTCTAGTTTGGCCTCCATGGGACTTGAATCTGCTCTATTGAATAAAACTGTGGGGAATTCGCCAGGAACATATGGAACTAATCTTCACATGCAAATCCGGAGCCCTGTGTCCTCTAATGGGACCAATAATTATCCAGATGTTAAATTGCCAAATGGTGGTGGTGTAATTCAGGCAAGCAGCGGTAGCATGTCAGATACTGCTGATGGTAGGGATTCTGGGAATTTCCATGATGATGAGAGTGGTTTGAAATCGAGGAATGCTGCACCGGCTGCTAATAGTAATCAAGTTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTCTACATAACACTCGTGGCACTGCGTGATGGAACAAGAGATCTGAAGCGTGTGCGCTTCAGCCGAAGAAGATTCGGAGAGCACCAAGCAGAAACCTGGTGGTCAGAGAACCGGGACAAGGTATATGAAAGATACAACGTTCGCAGCACGGACAAGTCTGCCAGCCAAGCGGCACGTAGTTCAGAAGGTGCCGGTTCGCCTGTTTCCCAAACTTAG 3357 0.4441 MADLASYGNANRDIEQALIALKKGAQLLKYGRKGKPKFCPFRLSNDESSLIWITSSGERNLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYSNGKRSLDLICKDKVEAEVWIAGLKALISSGQGGRSKIDGWSDGGLILDDSRDLTSNSPSESSASTSRGISSPDISATLPNTSPKSFQPDNTISERSHAPPDPTNMQVKGSASDAFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICENVKVGADKNVNYFSPRADVLLPRPLESNVVLDVHHIACGVRHASLVTRQGEVFTWGEESGGRLGHGVGKNVVQPRLVEALTSTTVDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGSDVSHWIPKRIAGPLEGLQIAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGDRGNVSYPREVESLSGLRTVAVACGVWHTAAVVEVIATHSGTSISSGKLFTWGDGDKNRLGHGDKEARLKPTCVPALIDYNFHKIACGHSLTAGLTTSGRVFTMGSTVYGQLGNPQSDGKLACLVGDKIAGESVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKTPALVEALKDRHVKYIACGSNYTAAICLHKWVSGAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAAHAPNPGKPYRVCDSCYAKLNKVAEASNSNRRNVLPRLSGENKDRLDKSDLRLSKAVIPSNMDLIKQLDSKAAKQGKKGDTFSLVRPSQPPLLQLKDVVLSTALDLRRTVPRPVVAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVQKLHAQVESLRQRCELQELELQRSAKKTQEAMALAAEESAKCKAAKEVIKSLTAQLKDLAEKLPPGVYDAENIRPAYLPNGLEPNGIHYPDSNGEQHTRAESISGSSLASMGLESALLNKTVGNSPGTYGTNLHMQIRSPVSSNGTNNYPDVKLPNGGGVIQASSGSMSDTADGRDSGNFHDDESGLKSRNAAPAANSNQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYERYNVRSTDKSASQAARSSEGAGSPVSQT 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02442 1118 Pfam Transcription factor BRX N-terminal domain 872 907 IPR027988 -
Pumo6g02442 1118 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Pumo6g02442 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 465 512 IPR000408 -
Pumo6g02442 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 348 399 IPR000408 -
Pumo6g02442 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 571 618 IPR000408 -
Pumo6g02442 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 296 344 IPR000408 -
Pumo6g02442 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 517 566 IPR000408 -
Pumo6g02442 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 403 451 IPR000408 -
Pumo6g02442 1118 PRINTS Chromosome condensation regulator RCC1 signature 389 405 IPR000408 -
Pumo6g02442 1118 PRINTS Chromosome condensation regulator RCC1 signature 405 419 IPR000408 -
Pumo6g02442 1118 PRINTS Chromosome condensation regulator RCC1 signature 507 525 IPR000408 -
Pumo6g02442 1118 PRINTS Chromosome condensation regulator RCC1 signature 298 314 IPR000408 -
Pumo6g02442 1118 PRINTS Chromosome condensation regulator RCC1 signature 348 364 IPR000408 -
Pumo6g02442 1118 PRINTS Chromosome condensation regulator RCC1 signature 565 586 IPR000408 -
Pumo6g02442 1118 SUPERFAMILY PH domain-like 13 123 - -
Pumo6g02442 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 466 517 IPR000408 -
Pumo6g02442 1118 MobiDBLite consensus disorder prediction 145 228 - -
Pumo6g02442 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 235 295 IPR000408 -
Pumo6g02442 1118 MobiDBLite consensus disorder prediction 146 227 - -
Pumo6g02442 1118 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 389 399 IPR000408 -
Pumo6g02442 1118 MobiDBLite consensus disorder prediction 1095 1118 - -
Pumo6g02442 1118 MobiDBLite consensus disorder prediction 781 814 - -
Pumo6g02442 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 570 621 IPR000408 -
Pumo6g02442 1118 SUPERFAMILY RCC1/BLIP-II 234 623 IPR009091 -
Pumo6g02442 1118 Coils Coil 821 862 - -
Pumo6g02442 1118 SMART fyve_4 620 689 IPR000306 GO:0046872
Pumo6g02442 1118 Gene3D - 185 358 IPR009091 -
Pumo6g02442 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 348 402 IPR000408 -
Pumo6g02442 1118 Gene3D - 13 129 IPR011993 -
Pumo6g02442 1118 ProSiteProfiles BRX domain profile. 1038 1093 IPR013591 -
Pumo6g02442 1118 FunFam Putative E3 ubiquitin-protein ligase HERC1 628 696 - -
Pumo6g02442 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 403 454 IPR000408 -
Pumo6g02442 1118 Pfam Transcription factor regulating root and shoot growth via Pin3 1037 1092 IPR013591 -
Pumo6g02442 1118 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 892 - -
Pumo6g02442 1118 CDD PH_PLC_plant-like 12 124 - -
Pumo6g02442 1118 Gene3D - 359 634 IPR009091 -
Pumo6g02442 1118 FunFam PH, RCC1 and FYVE domains-containing protein 1 206 455 - -
Pumo6g02442 1118 SUPERFAMILY FYVE/PHD zinc finger 622 699 IPR011011 -
Pumo6g02442 1118 Pfam FYVE zinc finger 622 688 IPR000306 GO:0046872
Pumo6g02442 1118 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 441 451 IPR000408 -
Pumo6g02442 1118 MobiDBLite consensus disorder prediction 973 1032 - -
Pumo6g02442 1118 Coils Coil 870 897 - -
Pumo6g02442 1118 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 626 688 IPR017455 -
Pumo6g02442 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 296 347 IPR000408 -
Pumo6g02442 1118 FunFam PH, RCC1 and FYVE domains-containing protein 1 456 627 - -
Pumo6g02442 1118 CDD FYVE_like_SF 631 684 - -
Pumo6g02442 1118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 635 695 IPR013083 -
Pumo6g02442 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 518 569 IPR000408 -
Pumo6g02442 1118 MobiDBLite consensus disorder prediction 995 1009 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02442 Pumo-Chr6 50913990 50924744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02442 1039 1109 Major Intrinsic Protein MIP AT1G31880 51.389 2.31e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02442 - - gmx:100805364 2066.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02442 6 50913990 50924744 Pumo3g01099 3 17675831 17678355 PCT