Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02441 ATGGCAAAGGTAAGGGAGAAGCTATACGTCACCGTTCCGAGTCTCTTTCGGTGCCCAATCTCCATGGACGTGATGCGGTCCCCCGTAAGCCTCTGCACCGGCGTCACATACGATCGCGCCAGCATTCAGCGCTGGCTCGACTCTGGACACGACACGTGTCCCGCCACCATGCAGGTTCTTCCCTCCAAAGACTTCATCCCCAATCTCACGCTCCACCGCCTCATCCGCCTCTGGCTCCTCTCCGCCGAACCACCGTCTCCCTCCTCCGCCGACCACCTCCGCGCCCTCCTCCGCAAAATCCAGACCTCCGAAGAAGATCTCGCCGGCACCCTCTCCAAAATCGCCGAATTCGCCAGAAAATTCCGGCGAGAAGTCGCCGCTTGCTATCCACCTTCCCCGGGTTCGACTCCGCCCTGGTCCGCGCGCTCGCCAGAAGCGCTTCCCTAA 447 0.6174 MAKVREKLYVTVPSLFRCPISMDVMRSPVSLCTGVTYDRASIQRWLDSGHDTCPATMQVLPSKDFIPNLTLHRLIRLWLLSAEPPSPSSADHLRALLRKIQTSEEDLAGTLSKIAEFARKFRREVAACYPPSPGSTPPWSARSPEALP 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02441 148 SUPERFAMILY RING/U-box 8 81 - -
Pumo6g02441 148 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Pumo6g02441 148 MobiDBLite consensus disorder prediction 129 148 - -
Pumo6g02441 148 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 91 IPR013083 -
Pumo6g02441 148 CDD RING-Ubox_PUB 13 65 IPR045210 -
Pumo6g02441 148 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Pumo6g02441 148 PANTHER WDSAM1 PROTEIN 9 121 IPR045185 GO:0061630
Pumo6g02441 148 FunFam RING-type E3 ubiquitin transferase 4 83 - -
Pumo6g02441 148 Pfam U-box domain 12 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02441 Pumo-Chr6 50873019 50873465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02441 5 120 U-box Gene Family AT5G64660 56.349 1.33e-42 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02441 - - gmx:100811783 197.593