Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02428 ATGGAAGATTATATATTCAACTATGTTTTGGGTGTTGACGTTTCAGCACAAAGTTTGTTCCTTTTTCCTATACGCCACACTTCTCTTCCAAGCAACAGGAACATGGATGCACAAGCCAAGAAAAAAGCACTGTTTCGTGCTAAATTGAATGCCCAGAAGAAGGAAAAGCGCATAGAATCTCCCCTTGTGAGGTATAATGAATTTGATCAACCTGTTTGCCGGGTTTGTGATGTTGTTCTAAAGTCTGAGTCTTTATGGGATGCACACCAAGTTTCTCGTAAGCATCGTGAGGCAATAAGTAATCTGAAAGCTAATGCAGCTGGATTAACTCAGCATAACAATGCAAAGCCTGTTGCTGATACCAACATTCCCAAGGCTAAACCAGAACATTCTTTGGACTCACAATCCAAACCGCCAGAAGGTTCACGAGTAGTTTCTAAACCTCAATCATCATCGGTGCTTCCACCAGGGTTTTTTGATGACAGTGATTCAGGAAAAACAAGATCTGAACATTTAGTGGACTCTGATTTAGGTAGAAAAGCTGGGGTTTCTGCTCAAAGTCAGGTGTTAAACTTGGAGAAGGAGAAAGGTCATTTTCATGACAATAATGCTGCAAAGTCAAATGTTAGCCAAGCCACAATGGAGAGTAGGCAGACATCAGTCAAGGATACAGAGATCCAGCAAGTAAAAGGGACTCTGCCTGAAGGATTTTTTGACAATAAGGAAGCTGATTTGCGTGCTCGTGGCATAAAGCCTGTTAAGCCAGATGTCAAAGACGAGTACAAGGAATTTGAGAAGTTGATTCAAGAAGACTTGCAGGAGGTGGACGATCGGTTGGAAGAAGAAGAGATTGATGCAGCCGAAATGATAGAAGAAGAGGAATTTGTAGAGCAGAAGGTCCTTAACGAGAAAGTGGAAATGTTGAAGAAGAGGAGATTGGAGCTAAAAGCTGCTAATGCTGTAAAGCGTGGTAAATCATCTGAGGTTGTAGTCAAGGAGTCTAGACAAGAAGAGTCATCCAGTGATGATGAAAGTGAAGAGAATTTTGCCGTGGACTGGAGAGCACAACACTTGTGA 1077 0.4197 MEDYIFNYVLGVDVSAQSLFLFPIRHTSLPSNRNMDAQAKKKALFRAKLNAQKKEKRIESPLVRYNEFDQPVCRVCDVVLKSESLWDAHQVSRKHREAISNLKANAAGLTQHNNAKPVADTNIPKAKPEHSLDSQSKPPEGSRVVSKPQSSSVLPPGFFDDSDSGKTRSEHLVDSDLGRKAGVSAQSQVLNLEKEKGHFHDNNAAKSNVSQATMESRQTSVKDTEIQQVKGTLPEGFFDNKEADLRARGIKPVKPDVKDEYKEFEKLIQEDLQEVDDRLEEEEIDAAEMIEEEEFVEQKVLNEKVEMLKKRRLELKAANAVKRGKSSEVVVKESRQEESSSDDESEENFAVDWRAQHL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02428 358 Gene3D Classic Zinc Finger 66 104 - -
Pumo6g02428 358 PANTHER UNCHARACTERIZED 35 358 IPR040050 GO:0003676|GO:0005681|GO:0008270
Pumo6g02428 358 MobiDBLite consensus disorder prediction 194 213 - -
Pumo6g02428 358 Pfam Zinc-finger of C2H2 type 73 95 - -
Pumo6g02428 358 MobiDBLite consensus disorder prediction 107 180 - -
Pumo6g02428 358 MobiDBLite consensus disorder prediction 321 358 - -
Pumo6g02428 358 MobiDBLite consensus disorder prediction 137 157 - -
Pumo6g02428 358 Coils Coil 265 318 - -
Pumo6g02428 358 MobiDBLite consensus disorder prediction 163 177 - -
Pumo6g02428 358 MobiDBLite consensus disorder prediction 321 339 - -
Pumo6g02428 358 SUPERFAMILY beta-beta-alpha zinc fingers 65 105 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02428 Pumo-Chr6 49770301 49775176 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02428 35 358 C2H2 Transcription Factor Family AT3G02860 50.882 3.63e-92 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02428 K13104 - gmx:100808515 554.288