Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02397 ATGCTGGGGGACTCAGCAGTGTTGGGAACAGGAGGAGGAGGCTCTGGAGATGCAGCAGTGGCAGCAGCAACAGTTGCTGCTGCATCATCAGGAGGAGCTCATGACGGCGGTGCCGACGGTGGCGGTGGCGGTGGTGGCGGTGGCGGATCAAATTCAGGGGATGATGAGAGGGGGAGAGTTGAGGAGGGTGACAGGAGCTTTGGTGGGAACAGGTGGCCAAGGCAGGAGACTCTGGCTTTGTTGAAGATACGGTCGGATATGGACGTGGCTTTTAGAGATGCAAGTGTAAAGGGTCCCTTGTGGGAAGAGGTTTCTAGGAAGCTGGCAGAGCTTGGCTACCACAGAAATGCCAAGAAGTGCAAAGAGAAGTTCGAGAACGTTTACAAGTACCACAAGAGAACCAAAGAAGGGCGAAGTGGGAAATCAGAAGGCAAAACTTATCGCTTCTTTGATCAATTACAAGCCCTTGAAAAGAACCCTGCAATCCATGGTGTCCAGTCCCCAAAGCCACCACCACAAACAACAACAGCACTACCAGCAACACCAGTGTCCATAGTGCTAACAACAACAACAACACCTTCATCAATAATGCCACTTCCCCCAACCACAACAGTGCCATTGCCACCACCAGTGTCTAATAATAACACCACTGTTCCATCCACAACTACACTCCCTTTGTCTCAAGCCATTCTCAACATAACACCACCATCAACACTAAACATCACAACCCCTTCTTATCCATCATCAAACCCTACATCATATTTCCCAACACAAACACCAAACCCTACTAGTAACAACAACAACAACCCTCCTAGCACTATCACCCCACCTTCCTTTCCCAACTTCCCCACCGATCTCTTGTCAAATTCGAGTTCCTCCTCGACTTCATCGGAGGAAACAACGATGGAGGGAGGGGGATCGCAGCGCAAGAGGAAGAGGAAGTGGAAGGACTTCTTTGAGAGGCTCATGAAGGAGGTGATAGTGAAGCAGGAGGAGCTGCAAAGGAGGTTCTTGGAGGCCATAGAGAAAAGGGAACAAGAGCGTGTGGTGAGGGAAGAAGCGTGGAGAATGCAAGAGATGCAAAGGATCAACAGGGAGAGGGAGATTCTAGCACAAGAGAGGTCCATTGCTGCAGCAAAAGACGCAGCTGTTATGGCATTTTTGCAAAAGATAGCCGAACATCAACAACAAGAAATTAATCTTGAGCCAGCATTGAATAACAACAGCATCACTGTTGCTCCACAGCAACCAGTGCCACAAGCAACTGCAACACCAACACCAACTCCAACACCACAACAAGCACAAACAAAAACAGTTCCTGAGGCCCCACCATTGCAGCCATTGGTCCCACAACCACAACCACAGCAACAACATCAGGTGCAGCAGCAACAACAAATAGTGGTGAGTAATGTGGAAATCAATAAAGCTGATAATAACGGTGAGAATTTGATGATGGGGGGAGCAAGCTCTTCAAGGTGGCCAAAAGTGGAGGTACAAGCACTGATAAATCTGAGAACAAGCCTGGAAACAAAGTACCAGGAAAGTGGACCAAAAGGGCCACTGTGGGAGGAGATCTCAGCCTTGATGAGGAAAATGGGGTACAACCGGAATGCCAAAAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAAAGCCACAAGAAGAGGCCTGAAGATTCCAAGACTTGTCCCTATTTTCATCAATTGGAGGCTATATACAAGGAGAGGAACAAGGTAGAGGGCCAAATGAAGCCGGAGAGCATGATGGCACCGCTCATGGTGCAGCCGGAGCAACAATGGCCTCCCCAAACCCACGTGGTGCCGCTAGAAGTAACCATGGGAGACGCCCTGAATGATCCCATGGACCAGCGGCACCACGAGGAGGATGAGGAGGACGAGGATGACAAGGAAATTGGAGACGACGACGAGGATGATGACGATGAAGGAGGTGGTAATTATGAGATAGTAGCAAGCAAACCGGCTTCAACTAATGCTTCTGGAAAGTGA 2025 0.4933 MLGDSAVLGTGGGGSGDAAVAAATVAAASSGGAHDGGADGGGGGGGGGGSNSGDDERGRVEEGDRSFGGNRWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSRKLAELGYHRNAKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDQLQALEKNPAIHGVQSPKPPPQTTTALPATPVSIVLTTTTTPSSIMPLPPTTTVPLPPPVSNNNTTVPSTTTLPLSQAILNITPPSTLNITTPSYPSSNPTSYFPTQTPNPTSNNNNNPPSTITPPSFPNFPTDLLSNSSSSSTSSEETTMEGGGSQRKRKRKWKDFFERLMKEVIVKQEELQRRFLEAIEKREQERVVREEAWRMQEMQRINREREILAQERSIAAAKDAAVMAFLQKIAEHQQQEINLEPALNNNSITVAPQQPVPQATATPTPTPTPQQAQTKTVPEAPPLQPLVPQPQPQQQHQVQQQQQIVVSNVEINKADNNGENLMMGGASSSRWPKVEVQALINLRTSLETKYQESGPKGPLWEEISALMRKMGYNRNAKRCKEKWENINKYFKKVKESHKKRPEDSKTCPYFHQLEAIYKERNKVEGQMKPESMMAPLMVQPEQQWPPQTHVVPLEVTMGDALNDPMDQRHHEEDEEDEDDKEIGDDDEDDDDEGGGNYEIVASKPASTNASGK 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02397 674 MobiDBLite consensus disorder prediction 279 303 - -
Pumo6g02397 674 PANTHER FI21293P1 38 628 - -
Pumo6g02397 674 MobiDBLite consensus disorder prediction 238 272 - -
Pumo6g02397 674 SMART sant 489 551 IPR001005 -
Pumo6g02397 674 SMART sant 68 130 IPR001005 -
Pumo6g02397 674 CDD GT1 491 556 - -
Pumo6g02397 674 MobiDBLite consensus disorder prediction 238 312 - -
Pumo6g02397 674 Pfam Myb/SANT-like DNA-binding domain 491 578 IPR044822 -
Pumo6g02397 674 Pfam Myb/SANT-like DNA-binding domain 70 156 IPR044822 -
Pumo6g02397 674 MobiDBLite consensus disorder prediction 26 71 - -
Pumo6g02397 674 MobiDBLite consensus disorder prediction 192 211 - -
Pumo6g02397 674 MobiDBLite consensus disorder prediction 417 463 - -
Pumo6g02397 674 MobiDBLite consensus disorder prediction 632 657 - -
Pumo6g02397 674 CDD GT1 70 135 - -
Pumo6g02397 674 ProSiteProfiles Myb-like domain profile. 70 128 IPR001005 -
Pumo6g02397 674 Gene3D - 72 133 - -
Pumo6g02397 674 Gene3D - 493 554 - -
Pumo6g02397 674 MobiDBLite consensus disorder prediction 621 674 - -
Pumo6g02397 674 MobiDBLite consensus disorder prediction 54 69 - -
Pumo6g02397 674 ProSiteProfiles Myb-like domain profile. 491 549 IPR001005 -
Pumo6g02397 674 FunFam Trihelix transcription factor GT-2 493 554 - -
Pumo6g02397 674 FunFam Trihelix transcription factor GT-2 72 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02397 Pumo-Chr6 47983341 47987029 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02397 68 605 Trihelix Transcription Factor Family AT1G76890 45.144 1.64e-141 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo6g02397 Myb_DNA-bind_4 1.3e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02397 - - gmx:100804788 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02397 6 47983341 47987029 Pumo6g02397 6 47983341 47987029 ECH
Pumo6g02397 6 47983341 47987029 Pumo3g01124 3 18042337 18045919 PCT