Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02396 ATGCCAAACAATAATTTTGAGATCAAGAAAATGAATAATGGTCACAGTGCTACTAGTACTACTATTGCTACTACTGCTACTGCTGCTGCTACTACTACTTCTCCGGTGAGTTCTTCTTCTTCATCTCGGTGGCCGAAGGCAGAAGTTCATGCTTTGATAAGGCTAAGGACAAGTCTTGACACCAAGTATCAAGAAAATGGACCAAAAGCTCCATTGTGGGAAGATATATCAATTGCAATGCAGAGGCTTGGGTACAACCGGAGTTCAAAGAGGTGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTGAGGGAGAGTAACAAAGAAAGGCGTGAAGATAGCAAGACATGTCCCTATTTCCACGAGCTTGAAGCTCTATACAAAGAAAAGGGCAAATCCCAAAACCCCTTTGGCATGTTCCAGAACATGAAGCCAAATGAGATGATGATGATGGAGCCACTGATGGTGCAACCGGAGCAACAATGGAGGCCTCCACCACAATCATTGGAAGAAGAGGGTATAGGGAAGGAGAATGCAAGTGAAGAATATCAAGAAAAAGAAGAAGAAGAAGAAGAAGAACAAAATGGTGGTGATGATTATAATGATGATGATGTTGAAGGAGATGGAGATAGTGTGGAAGATGAAGGAGCAAACCCGTGTGAGATTGCGACAAATAATTAA 690 0.4188 MPNNNFEIKKMNNGHSATSTTIATTATAAATTTSPVSSSSSSRWPKAEVHALIRLRTSLDTKYQENGPKAPLWEDISIAMQRLGYNRSSKRCKEKWENINKYFKKVRESNKERREDSKTCPYFHELEALYKEKGKSQNPFGMFQNMKPNEMMMMEPLMVQPEQQWRPPPQSLEEEGIGKENASEEYQEKEEEEEEEQNGGDDYNDDDVEGDGDSVEDEGANPCEIATNN 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02396 229 ProSiteProfiles Myb-like domain profile. 36 100 IPR001005 -
Pumo6g02396 229 MobiDBLite consensus disorder prediction 162 229 - -
Pumo6g02396 229 PANTHER FI21293P1 7 191 - -
Pumo6g02396 229 Gene3D - 44 105 - -
Pumo6g02396 229 MobiDBLite consensus disorder prediction 186 218 - -
Pumo6g02396 229 CDD GT1 43 107 - -
Pumo6g02396 229 FunFam Trihelix transcription factor GT-2 44 105 - -
Pumo6g02396 229 Pfam Myb/SANT-like DNA-binding domain 42 129 IPR044822 -
Pumo6g02396 229 Coils Coil 172 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02396 Pumo-Chr6 47946115 47946804 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02396 17 165 Trihelix Transcription Factor Family AT1G76880 59.873 8.39e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo6g02396 Myb_DNA-bind_4 1.4e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02396 - - gmx:100807507 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02396 6 47946115 47946804 Pumo3g01125 3 18067384 18070761 PCT