Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02394 ATGCAGCTAGGAGACGACTCAAGTGTGTTGGAGATCTCCTCCCATACCGAGCCCGAGATGGCGGTGACGGCGGTGACACCGCCGGAAGAGGCGGCACACGAGGATGACGACAACAACGGTGGTGGTGATGACGAGATAATTGGGATGGACGTGGATGCAAATTCAGGTGAAGGAAATGAAGGTAGTAATAAGATGAGCTTTGGAGGGAACCGGTGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCGGATATGGATGCAGTTTTTCGAGATTCAAGTCTTAAAGGTCCACTTTGGGAAGAAGTTTCAAGGAAACTGGCAGGGCTTGGATATCAACGAAGTGCAAAGAAGTGCAAGGAAAAGTTTGAGAACGTGTACAAGTACAACAAGAGAACCAAAGAGAACAAAAGTGGCAAATCACAAGGAAAAACCTATAAATTCTTTGATCAACTACAAGCCCTTGAGAACCAATTCACAGGTGTCTTACCCGCCAAAACCACAACCTACTACTTTGGCAACAACAACAAACACATTGACATTGCCAACTAG 555 0.4667 MQLGDDSSVLEISSHTEPEMAVTAVTPPEEAAHEDDDNNGGGDDEIIGMDVDANSGEGNEGSNKMSFGGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVSRKLAGLGYQRSAKKCKEKFENVYKYNKRTKENKSGKSQGKTYKFFDQLQALENQFTGVLPAKTTTYYFGNNNKHIDIAN 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02394 184 ProSiteProfiles Myb-like domain profile. 64 128 IPR001005 -
Pumo6g02394 184 PANTHER FI21293P1 29 167 - -
Pumo6g02394 184 FunFam Trihelix transcription factor GT-2 72 133 - -
Pumo6g02394 184 Pfam Myb/SANT-like DNA-binding domain 70 156 IPR044822 -
Pumo6g02394 184 CDD GT1 70 135 - -
Pumo6g02394 184 MobiDBLite consensus disorder prediction 1 70 - -
Pumo6g02394 184 MobiDBLite consensus disorder prediction 56 70 - -
Pumo6g02394 184 Gene3D - 72 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02394 Pumo-Chr6 47944180 47945518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02394 67 164 Trihelix Transcription Factor Family AT1G76880 78.571 2.10e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo6g02394 Myb_DNA-bind_4 3.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02394 - - gmx:100776819 272.322