Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02391 ATGTCCTTCCGCAGTATTGTTCGTGATGTGAGGGATGGATTTGGAAGCCTATCAAGGCGGAGTTTTGATGTAAGGCTTTCTGGTGGGAGCAAGTCAAATAGTTCGGTCCATGAGGTGCACGAGTGCCCACCAGTTATACAGAACAGCCGGTGGGCTAGCCTTCCGCCTGAGCTTCTTCGTGATGTTATTAAAAGATTGGAGGAAAGTGAGAGTACATGGCCTGCTCGTAAGCATGTGGTTGCGTGTGCTGCTGTGTGCAAGACCTGGAGAGAAATGTGCAAAGAAATTGTTACCAGTCCTGAGTTCTGTGGGAAGATTACTTTCCCTGTCTCCCTGAAGCAGCCTGGTTCAAAGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACATTCCACCTATTCCTTTGTCTTAGTCCTGCATTGCTAGTTGAAAATGGGAAGTTTCTTCTTTCTGCAAAACGGACCAGAAGAACGACATGCACAGAGTATATTATATCAATGGATGCAGATAACATATCAAGATCTGGTAGCACTTACATTGGAAAACTGAGGTCAAATTTTCTCGGCACCAAGTTTATAATTTATGATACACAGCCTCCCTATAATAATGCTCAGCTGTCTCCTCCAGGCCGAAGCCGTAGGTTTTATTCAAAAAAGGTTTCTCCAAAGGTCCCTAGTGGCAGCTACAATATTGCCCAAATCACCTATGAGTTGAATGTCCTTGGTACTAGGGGCCCACGCAGGATGAACTGCACCATGCGCTCAATCCCTATGTCAGCCCTCGAGCCTGGTGGCACTGTCCCCGGCCAGCCAGAGCTCCTTCCCCGCTCCCTTGAAGATTCCTTCCGGAGCATATCCTTTGCTAGATCGATTGACAACTCAACTGAGTTTAGCAGCTCTAGGTTCTTGGACATAGTTGTGGCAGGCAACGAAGAGGAACAGGGAAAAGATAGGCCTTTAGTTCTCAAGAACAAAGCACCGAGATGGCACGAGCAGCTGCAGTGTTGGTGCCTCAACTTTAGGGGAAGGGTGACTGTTGCCTCTGTCAAGAATTTCCAGCTGATTGCTGCGACTCAGCCACCTGCAGCCGGTGCTCCTACGCCCTCATCGCAGCCAGCACAGTCTGATCATGACAAGATTATTCTTCAGTTTGGCAAGGTTGGCAAGGACATATTTACTATGGACTATAGATATCCCCTATCTGCATTTCAGGCTTTTGCCATTTGCTTGACTAGTTTTGACACAAAACTGGCTTGTGAATAG 1275 0.4722 MSFRSIVRDVRDGFGSLSRRSFDVRLSGGSKSNSSVHEVHECPPVIQNSRWASLPPELLRDVIKRLEESESTWPARKHVVACAAVCKTWREMCKEIVTSPEFCGKITFPVSLKQPGSKDGTIQCFIKRDKSNLTFHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSGSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFYSKKVSPKVPSGSYNIAQITYELNVLGTRGPRRMNCTMRSIPMSALEPGGTVPGQPELLPRSLEDSFRSISFARSIDNSTEFSSSRFLDIVVAGNEEEQGKDRPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPPAAGAPTPSSQPAQSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLTSFDTKLACE 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02391 424 ProSitePatterns Tub family signature 2. 409 424 IPR018066 -
Pumo6g02391 424 SUPERFAMILY Tubby C-terminal domain-like 100 424 IPR025659 -
Pumo6g02391 424 PANTHER TUBBY-RELATED 45 422 - -
Pumo6g02391 424 CDD F-box_AtTLP-like 51 95 - -
Pumo6g02391 424 Pfam F-box domain 51 97 IPR001810 GO:0005515
Pumo6g02391 424 Gene3D - 46 98 - -
Pumo6g02391 424 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Pumo6g02391 424 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Pumo6g02391 424 PRINTS Tubby superfamily signature 167 183 IPR000007 -
Pumo6g02391 424 PRINTS Tubby superfamily signature 183 207 IPR000007 -
Pumo6g02391 424 PRINTS Tubby superfamily signature 381 400 IPR000007 -
Pumo6g02391 424 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Pumo6g02391 424 PRINTS Tubby superfamily signature 402 424 IPR000007 -
Pumo6g02391 424 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
Pumo6g02391 424 Pfam Tub family 112 419 IPR000007 -
Pumo6g02391 424 Gene3D Tubby Protein; Chain A 110 418 IPR025659 -
Pumo6g02391 424 SUPERFAMILY F-box domain 42 95 IPR036047 GO:0005515
Pumo6g02391 424 FunFam Tubby-like F-box protein 108 424 - -
Pumo6g02391 424 FunFam Tubby-like F-box protein 46 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02391 Pumo-Chr6 47718975 47723865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02391 1 424 TUB Transcription Factor Family AT1G76900 69.063 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pumo6g02391 Tub 6.5e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02391 K19600 - gmx:100803729 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02391 6 47718975 47723865 Pumo6g02391 6 47718975 47723865 ECH
Pumo6g02391 6 47718975 47723865 Pumo3g01126 3 18088188 18092287 PCT