Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02351 ATGTCCTTGCTAACGGTGGCGCACCAAAGGGGGTCAGGTGAGTTTATCCGGTTCACGGAAAATCATGGCGGCGACGGCGGTGGCGGCGACGGCAGTGGTGACGGTGATGGTGAATATGGTTATGGACATGATGGTGGTGGAGGTTCACTAGGATTGAATTTCAACCAAGTGATGCAACAAGGTGAGGTGACAATGCAAGGTGGTTCTTTGGTTTCAGGGTACAACAGGGGTGATCCAGAGTTGAGAGAAATGGTTTCAGCTTTGACACACGTGGTGTCTTCAGGGTCCGGACAGAGGAGCACCGAATGGATCCAGCAAAGTGGTTTTCCTATGATGTCAGGACATGCATCTTCTCTTTCACGTTTGTCTTCTTTCCCTTCTTCTTCTCATTCTCCTTCTTCTGGACCCTCTTGGGTTGGCCAAAAAAGAGGAAGAGAAGAAGAAGAGAGTAGCTCTTCCCATAACTTGATGCAACAACAACAACAAAGTGCTCCAAGACTCTTCAGAAACATTGGTGACTTCATGGTGCCTTCTCAGGGTGACTCATCTTCAGTGACTGAAGAAGCCCCCACCTCCACAACTACTAGTGTAACCGCCGCTGCAGCGGCGGTTACTGAAATCCCACCAGGAGGTGGGGAAAGGAGGAGAAAGTACAGGGGAGTGAGGCAGAGGCCATGGGGGAAATGGGCAGCTGAAATCCGCGATCCACACAAAGCAGCAAGAGTTTGGCTTGGCACATTTGACACAGAAGAAGCAGCAGCAAGAGCCTATGATGAAGCTGCATTGAGGTTCAGAGGCAACAGGGCAAAGCTAAACTTCCCTGAAAATGTAAGAGCAGTTCCACCCATTCAACCTTTTCAGGCCACGACTAGGCTAACCCTTTCTGATTCCTCCACCTCTCAATTCCGGCCACTCGCGGCTGCGGCAGTGGCGGCGCCACCCTTCATTCAGCCACCACAGATTCAGGGCTCCTCTGACTTGATCAGAGACTACTTGCAATACTCTCAGCTTCTACAGAGTGATTTTCAACAACAGCAGCAACAACAACAACAACAACAAACTTCTAGTTTGCTTCAGCAGTTGTACTATAATGCACAATTGGCTTCACTTCAATCATCTTCAATGTTATCATCATTACCTTCATTTTCTTCTTCTTCTGTGTCACCAACACCATTCCCATCATTCTCAACCTCTGCTCCTCAATTTTCCTCTGCTTCTTTTCCCTTGTTTTCAAGTCAACAAATGGGCTATTTCCAGCCACCGGAAACCCGCCCTCCCGCCAGCGGCGTGCCGGAGTTTCCGCCGTCAACATGGTCGGATACCAGTGGCCAGCCACCACCTTCTGGTTGA 1350 0.4978 MSLLTVAHQRGSGEFIRFTENHGGDGGGGDGSGDGDGEYGYGHDGGGGSLGLNFNQVMQQGEVTMQGGSLVSGYNRGDPELREMVSALTHVVSSGSGQRSTEWIQQSGFPMMSGHASSLSRLSSFPSSSHSPSSGPSWVGQKRGREEEESSSSHNLMQQQQQSAPRLFRNIGDFMVPSQGDSSSVTEEAPTSTTTSVTAAAAAVTEIPPGGGERRRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTEEAAARAYDEAALRFRGNRAKLNFPENVRAVPPIQPFQATTRLTLSDSSTSQFRPLAAAAVAAPPFIQPPQIQGSSDLIRDYLQYSQLLQSDFQQQQQQQQQQQTSSLLQQLYYNAQLASLQSSSMLSSLPSFSSSSVSPTPFPSFSTSAPQFSSASFPLFSSQQMGYFQPPETRPPASGVPEFPPSTWSDTSGQPPPSG 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02351 449 PRINTS Ethylene responsive element binding protein signature 218 229 IPR001471 GO:0003700|GO:0006355
Pumo6g02351 449 PRINTS Ethylene responsive element binding protein signature 240 256 IPR001471 GO:0003700|GO:0006355
Pumo6g02351 449 PANTHER DNA-BINDING DOMAIN 158 360 IPR044808 GO:0003700|GO:0009873
Pumo6g02351 449 SUPERFAMILY DNA-binding domain 217 275 IPR016177 GO:0003677
Pumo6g02351 449 SMART rav1_2 217 280 IPR001471 GO:0003700|GO:0006355
Pumo6g02351 449 CDD AP2 217 276 IPR001471 GO:0003700|GO:0006355
Pumo6g02351 449 Gene3D AP2/ERF domain 216 276 IPR036955 GO:0003700|GO:0006355
Pumo6g02351 449 MobiDBLite consensus disorder prediction 153 167 - -
Pumo6g02351 449 MobiDBLite consensus disorder prediction 434 449 - -
Pumo6g02351 449 MobiDBLite consensus disorder prediction 414 449 - -
Pumo6g02351 449 MobiDBLite consensus disorder prediction 18 39 - -
Pumo6g02351 449 MobiDBLite consensus disorder prediction 111 197 - -
Pumo6g02351 449 ProSiteProfiles AP2/ERF domain profile. 217 274 IPR001471 GO:0003700|GO:0006355
Pumo6g02351 449 MobiDBLite consensus disorder prediction 111 138 - -
Pumo6g02351 449 MobiDBLite consensus disorder prediction 176 197 - -
Pumo6g02351 449 Pfam AP2 domain 217 266 IPR001471 GO:0003700|GO:0006355
Pumo6g02351 449 FunFam Ethylene-responsive transcription factor 2 216 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02351 Pumo-Chr6 46399486 46402475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02351 214 281 AP2-EREBP Transcription Factor Family AT2G33710 77.941 6.37e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo6g02351 AP2 3.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02351 - - gmx:100804843 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02351 6 46399486 46402475 Pumo6g02351 6 46399486 46402475 ECH
Pumo5g02108 5 57582173 57583853 Pumo6g02351 6 46399486 46402475 PCT
Pumo6g02351 6 46399486 46402475 Pumo3g01145 3 18618439 18620157 PCT