Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02303 ATGCTTCTAAAATCCCCTCTCTGTTATCTCAACCTAAACCTCCCAAACACCCCATCCATGGCGGGAGCCACAGGAAGAACCCTCTTCACCCTCTCCTTCTCTTCCTCCTCTTCCCTCACGCGCCTCTCTCGCTTCACAAAGCGCGTCCCACTCCCCCAACCCCTCCCCCTCTTCCCCCGCCGCCTCCGCACCCTCTGCTCCGTCGCCGCCGCCGCGCCGGAAACCGCCGACGCGAAGCACTCGCTTCTCCTCGAGCGGCTCCGGTCCCGACACCTCCGGGACGCCGTGAGAGCCGCCCCTGAACCAAGGAAGAAGGCGAAGGTTGCCGAAGCTGAGAAAGAGAGGGCGAATGAGAAGAAGAAGAATGTGGTTGCGAGCTTCGAGGAGCTGGGAGTGAGTGAGGAGGTCATGGGGGCGGTTAGGGAAATGGGAATTGAAGTGCCTACTGAGATACAGGGTATTGGCATCCCCGCCGTTTTGGAAGAGAAGAGCGTCGTTTTGGGGTCGCATACTGGCTCTGGCAAAACCCTCGCTTACTTGCTTCCACTTGTTCAGTTGCTAAGAAGGGACGAACAATTGAATGGAATACTGTTGAAGCCCAGGCGTCCACGAGCTGTTGTGCTGTGTCCTACGAGGGAGTTATCTGAGCAGGTTTTTCGAGTTGCAAAATCGATAAGCCATCATGCTCGATTCAGGTGTACCATGGTAAGTGGTGGTGGCCGGCTTAGGCCTCAGGAGGATTCACTTAATAACCCCATTGATATGGTAGTTGGTACCCCTGGCAGGGTTCTTCAACATATTGAGGAGGGAAATATAGTATATGGTGACATCAAATACTTGGTATTGGATGAGGCAGACACAATGTTTGATCGGGGCTTTGGTCCTGATATACGCAAATTTCTGGGTCCATTAAAAAATCGCGCTTCAAAATCTGATGGCCTAAGTTTTCAGACTATCTTGGTAACTGCAACCATGACAACGGCTGTGCAAAAGCTGATTGATGAGGAGTTTCAAGGCATTGTTCATCTGCGCACGTCAACATTGCATAAAAAGATTTCTTCTGCTCGTCATGATTTTATTAAACTTTCAGGTTCTGAGAACAAGCTTGAAGCATTACTTCAGGTACTAGAGCCGAGCCTAGCAAAAGGGAACAAGGTAATGGTTTTCTGCAATACATTGGATTCAAGTCGTGCCGTGGATCATTTTCTTGGTGAAAATCAGATTTCTACTGTGAACTACCATGGGGAGGTACCAGCAGAGCAAAGGGTTGAGAATCTCAGAAAGTTTAAGAGTGATGGTGATGATTGTCCTACATTGGTTTGCACAGACTTGGCTGCTAGGGGTCTAGACATGGATGTAGATCATGTTGTCATGTTTGACTTCCCCTTGAATTCTATTGACTACCTTCATCGCACAGGTAGAACTGCTCGTATGGGTGCAAAAGGTATGAAATCTGGTAAAGGGTCACCAGTCAAATCTATGAAGAAAGGGATTAACGTTTCAAAATCTGGAAAATCTTCTAGTGCAAGTAGCTTGAGAAAAGCTTCTTCAGAGAAGAGGCAAACAAGTAAAATGGTCAGTGCCACCAAATCTACGAATTCTAAACTCAATGTTGTGGGGTTTAGGGGTAAAAATTCATCATCAAATAATAAAGAATCGGTTTTGTGA 1668 0.4802 MLLKSPLCYLNLNLPNTPSMAGATGRTLFTLSFSSSSSLTRLSRFTKRVPLPQPLPLFPRRLRTLCSVAAAAPETADAKHSLLLERLRSRHLRDAVRAAPEPRKKAKVAEAEKERANEKKKNVVASFEELGVSEEVMGAVREMGIEVPTEIQGIGIPAVLEEKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGILLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLNNPIDMVVGTPGRVLQHIEEGNIVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRASKSDGLSFQTILVTATMTTAVQKLIDEEFQGIVHLRTSTLHKKISSARHDFIKLSGSENKLEALLQVLEPSLAKGNKVMVFCNTLDSSRAVDHFLGENQISTVNYHGEVPAEQRVENLRKFKSDGDDCPTLVCTDLAARGLDMDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGMKSGKGSPVKSMKKGINVSKSGKSSSASSLRKASSEKRQTSKMVSATKSTNSKLNVVGFRGKNSSSNNKESVL 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02303 555 MobiDBLite consensus disorder prediction 478 555 - -
Pumo6g02303 555 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 482 IPR027417 -
Pumo6g02303 555 Pfam DEAD/DEAH box helicase 149 332 IPR011545 GO:0003676|GO:0005524
Pumo6g02303 555 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 368 516 IPR001650 -
Pumo6g02303 555 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Pumo6g02303 555 CDD SF2_C_DEAD 356 483 - -
Pumo6g02303 555 Gene3D - 90 344 IPR027417 -
Pumo6g02303 555 Pfam Helicase conserved C-terminal domain 368 479 IPR001650 -
Pumo6g02303 555 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 80 482 - -
Pumo6g02303 555 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 343 IPR014001 -
Pumo6g02303 555 SMART ultradead3 144 363 IPR014001 -
Pumo6g02303 555 CDD DEADc 136 335 - -
Pumo6g02303 555 SMART helicmild6 397 479 IPR001650 -
Pumo6g02303 555 Gene3D - 354 496 IPR027417 -
Pumo6g02303 555 MobiDBLite consensus disorder prediction 499 555 - -
Pumo6g02303 555 Coils Coil 106 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02303 Pumo-Chr6 44957173 44964012 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02303 124 483 Eukaryotic Initiation Factors Gene Family AT3G19760 27.793 1.09e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02303 - - gmx:100805709 784.252