Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02300 ATGAGTAAATTGGTGAAAAATTTGAGGACAACAACCCCTCCTATCGAAGAACCAAAGACTTCACCATCCAAGTCCCAAAGGGACTCACTGATTTTGGAACAGTTCAAGCAAAGGAAACTCAAAGGGTCTCCAAAAGACACAAAGGGTGGCCCCCAAGTGTGTTCCAATTCAGTGCCATTAAGTTTGGATGCTAATACTGAGAAGGTGGTCCAAAAGGGTGTGCAGAATGAGAATGACCCCACCATGGTGGTTGCAAGTTTCAAGGAGTTGGGTGTGAGTGAGGAGCTTGTTGAGGTCATGGAGGGGATTGGGAAGAGTGTGTTGTTGAGTGCACCATCTGAACCTGACAGAACCTTGGCATTCTTGTTGCCCCTTATTCAGCTGCTAAGACGGGATGGAGGGTTGCTTGGTTCAAATTCAAAGCATCCACGAGCCATCGTGCTTTGCGCTACAGAGGAGAAAGCTGAGCAGTGCTTTAATGCTGCAAAATGTATCATCCATAACGCAGAATTGAAGTCTGCTAAGGACTGTGCTTCACCAGATAACAACCAGTCACATGCCTCAATTGGCCTCATGATTGGAACTCCTAGTGAGATTCTTGATTACATTGAAGGGGGGAGTGTTGTTCCTGCTGAAATAAGATACTTGGTGTTGGATGAGGCAGATTGCATGCTTGGTAGTGGCCTTGGTCCTGAAATCCATAAAATTCTCAGACCATTACAAGATCATGAATCAAAATCTTCTGTCAAAAGATTACAAACTATTTTGGCGATTTCAACAATAGCTGAGGTTTTGGGTGAACAATCCCCCATTGTAAAGCATCTTGAGCTGCGACCATGCAGGAAATATTTCTGCAATGTCTCTAGAAATGGAACAAACCGAAGTCTTTCATTTCACAGAGTCTCTTCACGCTTTTAG 918 0.4423 MSKLVKNLRTTTPPIEEPKTSPSKSQRDSLILEQFKQRKLKGSPKDTKGGPQVCSNSVPLSLDANTEKVVQKGVQNENDPTMVVASFKELGVSEELVEVMEGIGKSVLLSAPSEPDRTLAFLLPLIQLLRRDGGLLGSNSKHPRAIVLCATEEKAEQCFNAAKCIIHNAELKSAKDCASPDNNQSHASIGLMIGTPSEILDYIEGGSVVPAEIRYLVLDEADCMLGSGLGPEIHKILRPLQDHESKSSVKRLQTILAISTIAEVLGEQSPIVKHLELRPCRKYFCNVSRNGTNRSLSFHRVSSRF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02300 305 MobiDBLite consensus disorder prediction 1 58 - -
Pumo6g02300 305 MobiDBLite consensus disorder prediction 31 45 - -
Pumo6g02300 305 Pfam DEAD/DEAH box helicase 104 257 IPR011545 GO:0003676|GO:0005524
Pumo6g02300 305 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 279 IPR014001 -
Pumo6g02300 305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 257 IPR027417 -
Pumo6g02300 305 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 98 262 - -
Pumo6g02300 305 Gene3D - 61 269 IPR027417 -
Pumo6g02300 305 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02300 Pumo-Chr6 44852891 44855867 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02300 84 240 Eukaryotic Initiation Factors Gene Family AT3G19760 22.527 1.88e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02300 - - gmx:100800575 449.514