Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02297 ATGGCGGCGGCGGCGATTTCTGCTCCAGTGGCTCCAGCGGCGGCGGTTCCAGCGGCAGCATTGAACGGTGCGCAATTCGGGAGTGCCTCTCTGTACGTTGGTGATCTTGAGGGGAACGTGAACGAGGCGCAACTGTTTGAACTGTTTGGCCAAGTGGCTCAAGTGGTTTCAATCAGGGTTTGCAGGGATCAGACGAGGCGATCCTCTCTCGGATACGCATATGTCAATTTTGCCAACTTCCAAGATGCTGCTAATGTCATGGAACATCTGAATTTCACTACTCTGAATGGAAGATCCATTCGTATCATGTTTTCTCATCGAGATCCTAGCATTCGGAAAAGTGGATATGCAAATGTGTTTATCAAGAACCTGGACACATCAATAGATAACAAGGCATTACATGACACTTTTGCTGCCTTTGGATCTGTGCTCTCTAGTAAGACCTTAAGCAGCTCTTTAGGCACCTATGGTACAATAACTAGTTCTGTGGTTATGAAGGACACAGATGGGAAGTCTAGATGTTTTGGTTTTGTGAATTTCGAAAATCCAGATTCTGCAGCTGCTGCCGTTGAAAGGTTAAACGGAACCACAGTCAACGATGATAAGGTTTTATATGTAGGGAGGGCTCAGAGAAAAGCAGAAAGAGAGGCAGAATTGAAAGCCAGATTTGAGCAGGAAAGAAAAAGCAAATATGAGAAATTACAAGGTGCCAATTTATACCTGAAAAACCTTGATGATAACGTCAATGATGTAAAATTGAAGGAGCTATTTTCTGATTTTGGAACAATAACATCTTGCAAGGTGATGCTTGAATCAAATGGGCAAAGCAAGGGCTATGGTTTTGTTGCCTTTTCTACTCCTGAGGATGCAAGTAAAGCGTTGAATGAAATGAATGGAAAGATCATTGGACGGAAGCCTCTGTATGTAGCTGTGGCCCAGCGCAAAGAAGAGAGGAAGGCTTGTTTGCAAGCTCAGTTTTCTCAAATGCAAGTGCCAGGTGTAATTACACCTCTGTCTGCGGGAATCCCTGGATATCATCCGGGGGCACCAAGACTTGCCCCTCAGCAGCTGTATTATGGTCAAGGGACACCTGGTCTCATACCACCTCAGCCAGCAGGATATGGTTTCCAGCAGCAACTATTGCCAGGCATGCGTTCTGGTGTTGCTCCAAATTTCATTATGCCATACCACCTACAGGGACAGGGTCCTCCTAGGCAAAGGATGGGTGCTCGAAGAGTTGGAAATCTCCAACAGGTGCAAGCAGAACCAGTTATTTCACACACCTGTAAACTTGAAATTTTGAACCAGATGCAGCATCGTAACTCCAACCAAGGGTTTAGATACATGGGAAATGGTCGAAATGGCATGGATCTGTCAGTAGTTCCCCAAGGTCTCGGGGGTGCAATGATGTCATTGCCCTTTGATGGTTCAGGAATTTCTGCAGCTCCTATTGATGATCAGCGTCCTGGTGGTGCATTGTCTAACACACTTGCTTCATCTCTGGCTTCTGCTACCCCAGAAAATCAGCGCCTGATGCTGGGTGAAAATCTATATCCACTTGTGGACCGACTTAAGCCAAATCATCAGACTGCAAAGGTGACGGGAATGTTGCTAGAAATGGATCAGTCAGAGGTAATCCATTTGATTGAGTCTCCCGAGGACTTGAAAATAAAGGTGTCTGAGGCAATGCAAGTCCTTTGTGAAGCCGCATCAGGTTCTGAAGAAGTTGGTGATCAACTTGGCTCATTGTCATTGAATGAATGA 1764 0.4569 MAAAAISAPVAPAAAVPAAALNGAQFGSASLYVGDLEGNVNEAQLFELFGQVAQVVSIRVCRDQTRRSSLGYAYVNFANFQDAANVMEHLNFTTLNGRSIRIMFSHRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGSVLSSKTLSSSLGTYGTITSSVVMKDTDGKSRCFGFVNFENPDSAAAAVERLNGTTVNDDKVLYVGRAQRKAEREAELKARFEQERKSKYEKLQGANLYLKNLDDNVNDVKLKELFSDFGTITSCKVMLESNGQSKGYGFVAFSTPEDASKALNEMNGKIIGRKPLYVAVAQRKEERKACLQAQFSQMQVPGVITPLSAGIPGYHPGAPRLAPQQLYYGQGTPGLIPPQPAGYGFQQQLLPGMRSGVAPNFIMPYHLQGQGPPRQRMGARRVGNLQQVQAEPVISHTCKLEILNQMQHRNSNQGFRYMGNGRNGMDLSVVPQGLGGAMMSLPFDGSGISAAPIDDQRPGGALSNTLASSLASATPENQRLMLGENLYPLVDRLKPNHQTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAMQVLCEAASGSEEVGDQLGSLSLNE 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02297 587 FunFam Polyadenylate-binding protein 490 572 - -
Pumo6g02297 587 FunFam Polyadenylate-binding protein 22 117 - -
Pumo6g02297 587 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 493 571 IPR002004 GO:0003723
Pumo6g02297 587 CDD RRM4_I_PABPs 236 314 - -
Pumo6g02297 587 Coils Coil 206 226 - -
Pumo6g02297 587 Gene3D - 491 570 - -
Pumo6g02297 587 PANTHER RNA BINDING PROTEIN 87 148 - -
Pumo6g02297 587 Gene3D - 22 117 IPR012677 -
Pumo6g02297 587 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 211 IPR000504 GO:0003723
Pumo6g02297 587 Gene3D - 118 148 IPR012677 -
Pumo6g02297 587 SUPERFAMILY PABC (PABP) domain 437 572 IPR036053 GO:0003723
Pumo6g02297 587 SUPERFAMILY RNA-binding domain, RBD 29 149 IPR035979 GO:0003676
Pumo6g02297 587 FunFam Polyadenylate-binding protein 220 325 - -
Pumo6g02297 587 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 237 314 IPR000504 GO:0003723
Pumo6g02297 587 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 202 IPR000504 GO:0003723
Pumo6g02297 587 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 307 IPR000504 GO:0003723
Pumo6g02297 587 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Pumo6g02297 587 Gene3D - 213 323 IPR012677 -
Pumo6g02297 587 Gene3D - 149 206 IPR012677 -
Pumo6g02297 587 SMART poly_2 505 569 IPR002004 GO:0003723
Pumo6g02297 587 Pfam Poly-adenylate binding protein, unique domain 501 566 IPR002004 GO:0003723
Pumo6g02297 587 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Pumo6g02297 587 SUPERFAMILY RNA-binding domain, RBD 148 315 IPR035979 GO:0003676
Pumo6g02297 587 SMART rrm1_1 30 103 IPR000504 GO:0003723
Pumo6g02297 587 SMART rrm1_1 118 207 IPR000504 GO:0003723
Pumo6g02297 587 SMART rrm1_1 238 310 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02297 Pumo-Chr6 44815377 44819690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02297 27 566 Eukaryotic Initiation Factors Gene Family AT1G22760 47.740 2.61e-152 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02297 K13126 - gmx:100783163 688.723