Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02277 ATGGAGAGAGAGTTGTGGGGTTCTGTTTTCATTTGGTGGGTGCTATTAGCTCACCCATTATGGTTGGTTTCTGCTAACATGGAAGGTGATGCTTTACATAGCCTGAGGACAAATTTACAGGATCCTAACAATGTTTTGCAAAGTTGGGACCCTACACTGGTCAATCCATGCACGTGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTTGATCTGGGAAATGCTGCTTTATCTGGTCAACTTGTTCCACAGCTTGGCCAGCTCAAAAACTTACAGTATTTGGAACTTTACAGCAATAACATTACTGGACCAATTCCAAATGACCTGGGGAATCTTACTAACTTAGTGAGCTTGGATCTGTATCTAAACCGTTTCAGTGGACCTATCCCAGCATCATTGGGCAAGTTGTCAAAATTGCGTTTCCTCCGGCTTAACAACAACAGCCTGACTGGTCCTATTCCCATGTCACTGACTAATATTACAGCTCTCCAAGTGCTGGATTTGTCTAACAACCATCTCTCAGGTGTGGTTCCTGATAATGGCTCCTTCTCATTATTCACTCCTATCAGTTTTAACAACAACTTGGATCTATGTGGCCCAGTCACTGGGCATCCTTGTCCCGGATCTCCTCCATTTTCTCCTCCTCCCCCTTTTGTCCCACCGTCCCCAATCTCTGCTCCAGAAGGAAATAGTGCCACTGGTGCAATAGCTGGAGGAGTAGCTGCAGGTGCTGCTCTGTTATTTGCTGCTCCTGCAATTGTGTTTGCATGGTGGCGTCGAAGGAAACCACAGGAATTTTTCTTTGATGTGCCCGCTGAAGAGGATCCTGACGTACACCTTGGGCAGCTTAAGAGGTTCTCACTACGAGAACTGCAAGTTGCAACAGATACTTTCAGCAATAAGAACATTCTTGGAAGGGGAGGATTTGGTAAGGTGTACAAAGGACGTTTGACAGATGGTTCACTGGTCGCTGTGAAAAGATTGAAAGAGGAGCGCACGCCTGGTGGGGAGCTTCAGTTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTGCACCGAAATCTCCTCCGTTTACGTGGGTTCTGTATGACTCCAACTGAAAGGCTACTTGTATATCCTTACATGGCTAATGGAAGTGTTGCCTCATGCTTAAGAGAGCGTCCGGCACATCAACAACCCCTTGATTGGCCAACAAGAAAAAGAATTGCATTGGGATCAGCAAGGGGTCTTTCATATTTGCATGATCATTGTGACCCAAAGATTATTCATCGTGATGTAAAAGCTGCAAACATATTGTTGGACGAGGAATTTGAGGCTGTTGTTGGGGATTTTGGATTGGCTAAACTGATGGACTACAAGGACACCCATGTTACAACTGCTGTACGGGGCACAATTGGGCACATAGCACCAGAGTACCTTTCTACTGGTAAATCTTCTGAGAAAACTGACGTCTTTGGGTATGGTATAATGCTTCTGGAGCTGATCACTGGACAAAGAGCTTTTGACTTGGCTCGTCTTGCAAATGATGATGATGTTATGTTGCTGGATTGGGTAAAAGGACTTCTGAAAGAAAAGAAGCTAGAAATGCTGGTTGATCCTGATCTCCAAAGCAATTACATAGATGCTGAGGTAGAACAGTTAATCCAGGTTGCACTGCTTTGCACACAAGGTTCCCCTATGGACCGGCCTAAGATGTCAGACGTGGTGAGAATGCTTGAAGGCGACGGCTTGGCAGAAAGATGGGACGAGTGGCAAAGGGTGGAAGTTCTACGCCAGGAAGTGGAGCTGGCCCCTCATCCCAATTCTGATTGGATTGTTGACTCAACTGAAAATCTACATGCAGTTGAGTTATCTGGTCCAAGGTGA 1875 0.4544 MERELWGSVFIWWVLLAHPLWLVSANMEGDALHSLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGQLKNLQYLELYSNNITGPIPNDLGNLTNLVSLDLYLNRFSGPIPASLGKLSKLRFLRLNNNSLTGPIPMSLTNITALQVLDLSNNHLSGVVPDNGSFSLFTPISFNNNLDLCGPVTGHPCPGSPPFSPPPPFVPPSPISAPEGNSATGAIAGGVAAGAALLFAAPAIVFAWWRRRKPQEFFFDVPAEEDPDVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPAHQQPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQSNYIDAEVEQLIQVALLCTQGSPMDRPKMSDVVRMLEGDGLAERWDEWQRVEVLRQEVELAPHPNSDWIVDSTENLHAVELSGPR 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02277 624 SMART serkin_6 301 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g02277 624 Gene3D Ribonuclease Inhibitor 24 211 IPR032675 -
Pumo6g02277 624 FunFam Somatic embryogenesis receptor kinase 1 24 211 - -
Pumo6g02277 624 FunFam Somatic embryogenesis receptor-like kinase 1 378 595 - -
Pumo6g02277 624 Pfam Leucine Rich Repeat 93 115 IPR001611 GO:0005515
Pumo6g02277 624 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Pumo6g02277 624 SUPERFAMILY L domain-like 29 192 - -
Pumo6g02277 624 SUPERFAMILY Protein kinase-like (PK-like) 281 576 IPR011009 -
Pumo6g02277 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Pumo6g02277 624 FunFam Somatic embryogenesis receptor kinase 1 270 377 - -
Pumo6g02277 624 Pfam Protein kinase domain 302 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g02277 624 ProSiteProfiles Protein kinase domain profile. 301 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g02277 624 Gene3D Transferase(Phosphotransferase) domain 1 378 595 - -
Pumo6g02277 624 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 586 - -
Pumo6g02277 624 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Pumo6g02277 624 Gene3D Phosphorylase Kinase; domain 1 270 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02277 Pumo-Chr6 43504538 43512094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02277 8 624 Receptor kinase-like Gene Family AT1G71830 88.122 0.0 1042
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Pumo6g02277 Pkinase 2.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02277 K13418 - gmx:100813918 1166.76