Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02260 ATGGATTCAAATGGGAGCCTACGTGCTAACACCTGGGCGAGGTCGTCGTCCTTAACCTCTCCTGCAAGTGGTTTATCCTCAGATCCTCTTTCTTTCCCAGGTTTTGGTTTGCAGCATAACCAACCTAAATGGGATGATCCCTCAAATTCAGATTTTGGGATCAGGGCAGAATCACCTTTCAAAGATTTCAACCAGCCCTCTCAAACCCAGTCTCCGCTTCCTTGCAACTCAAACAACGAGATTGAAATCCCTGATCAAGAAAACTGTCATCTGAGTGAATCATCACAAACCAATACACTCCAAGATTGGGATCCCAGTGTGATGTTGAATAACCTGTCTTTCTTGGAAGAAAAGATTCATCAGCTCCAGGATCTAGTGCATTTGATTGCTCGTCAAAAAGGCGTTGGACAACCTAATGAACTTGTAACTCAGGAACAGCAGCTCATCACAACTGATCTTACATCGATCATTATTCAATTGATCTCTACTGCAGGTAGTCTTCTCCCTTCTGTTAGGCATAACCTTGTAAACACTAGTTCATTGGTTGGACAGATTGATCAGCTTCGTGGGACGACCGTTCCTTCTGGGACCGGTGGAAGTAGCAGCTGTATTCAACCACAAAATAGTAGTGGGAAAAAAATATCTGATCAGTCCATGCAGACTGAACTACCTAACAATTGTGAAATGGAGCAAAACTACAATATGGTAGAACCTGAACTCAAAGATGAAGAGGATGCAGATGATGGAGAAAACCTTGCCCCTGGTTCGTACGAGATTCTACAATTAGAAAAAGAAGAAATCCTTGCACCTCATACCCATTTCTGTACAATTTGTGGGAAGGGGTTCAAGAGAGACGCAAATCTTCGAATGCACATGCGGGGCCACGGTGACGAGTACAAGACCCCAGCAGCGCTTGCAAAACCGCACAAAGAATCTGCGTCACCAAAGCTCATCAAGAGGTATTCCTGCCCCTATCCCGGCTGCAAGCGCAACAAGGATCACAAGAAGTTCCAACCTCTGAAGACGATCTTGTGTGTCAAAAACCATTACAAAAGGACACATTGTGACAAGAGTTACACTTGCAGCAGGTGCAACACCAAGAAGTTCTCAGTCATGGCTGATCTAAAAACTCATGAAAAGCACTGTGGTAAGGATAAGTGGCTCTGTTCATGTGGCACAACATTTTCTAGGAAAGACAAGCTTTTTGGGCACATTGCTCTTTTCCAAGGGCACACACCAGCCATTCCCTTGGATGACACTAAAGGGGTAGGGGTAGCTGAGCCACCCATTCAGGACAGCAGCAAAGAAAACAACAGTAAGGCACAGAGCATGAACTTCACTTTTGGATCAAATCCTTCAAATGGAAATGAAGTTCAAAATGTGATGGATGCAAAAGGCAATAATAGTGATGATCCCATCAATTATTTCTCATCATTGAACTTTGAAGCCAACTTTGGTGGGTTTAATGAGTTCACCAGACCTCTATTTGATGACTCAGAAGGTTCATTCTCTTTTGTCATGCCAGGATCTTTCAAATCTGGAGGAGAATCAAGTTCTGACAATCTTTTGTAA 1572 0.4358 MDSNGSLRANTWARSSSLTSPASGLSSDPLSFPGFGLQHNQPKWDDPSNSDFGIRAESPFKDFNQPSQTQSPLPCNSNNEIEIPDQENCHLSESSQTNTLQDWDPSVMLNNLSFLEEKIHQLQDLVHLIARQKGVGQPNELVTQEQQLITTDLTSIIIQLISTAGSLLPSVRHNLVNTSSLVGQIDQLRGTTVPSGTGGSSSCIQPQNSSGKKISDQSMQTELPNNCEMEQNYNMVEPELKDEEDADDGENLAPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESASPKLIKRYSCPYPGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDTKGVGVAEPPIQDSSKENNSKAQSMNFTFGSNPSNGNEVQNVMDAKGNNSDDPINYFSSLNFEANFGGFNEFTRPLFDDSEGSFSFVMPGSFKSGGESSSDNLL 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02260 523 MobiDBLite consensus disorder prediction 61 82 - -
Pumo6g02260 523 MobiDBLite consensus disorder prediction 1 27 - -
Pumo6g02260 523 SUPERFAMILY beta-beta-alpha zinc fingers 271 298 IPR036236 -
Pumo6g02260 523 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 87 498 IPR044300 GO:0010044|GO:0010447
Pumo6g02260 523 SMART c2h2final6 273 295 IPR013087 -
Pumo6g02260 523 SMART c2h2final6 359 381 IPR013087 -
Pumo6g02260 523 SMART c2h2final6 321 354 IPR013087 -
Pumo6g02260 523 Gene3D Classic Zinc Finger 257 323 - -
Pumo6g02260 523 MobiDBLite consensus disorder prediction 1 82 - -
Pumo6g02260 523 ProSitePatterns Zinc finger C2H2 type domain signature. 275 295 IPR013087 -
Pumo6g02260 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 273 300 IPR013087 -
Pumo6g02260 523 MobiDBLite consensus disorder prediction 192 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02260 Pumo-Chr6 42708067 42710449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02260 240 523 C2H2 Transcription Factor Family AT1G34370 67.905 1.15e-132 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo6g02260 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02260 - - gmx:100500526 981.474