Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02258 ATGGGCAGGTATGATCAGTATATCCCCACTTCTTTCCTTTGTATTTTCTTCTTCTTTTGTTTCTGTCCCATGGTGTTGTCTCTGCTATCTCAAAACCAAACAGAAACCATGAACAACCTCTCAAAGATTCTTGCTCCTCCTGTTCCATGGAATGGCTCAAAACCACCATGTGCATGGAAGGGAGTGACTTGTGACTCTACCAATTCCTCTGTAATAGGGATTGATTTATCTGGGTTTTCAATCACTCCTTCTGACTTTCTGCCTCTTGTTTGCAAAATTGAAACTTTGGAGCATCTTAATGTCTCCAACAACCGTCTGAGCTCAATCCCAGATGGTTTCATTACTGAGTGTGGAAAGATTAAGGGGCTGAAGCTGCTGAATTTCAGTGGAAACAGATTAGGAGGTGATTTACCAACTTTTCATGAGTTTGATGCATTGGAATCCCTGGATATGTCTTTCAATAAGTTGGGAGGGAATATTGTTATACAGTTAGATGGATTGGTTAGCCTCAAAAGTTTGAATCTTGCTTTCAATAATTTCACTGGGTCTCTTCCTACCAAACTAGGAAAGTCCATGGTTTTGGAGCAGCTTGTGCTTTCTAACAATCACTTTGATGGCAAAATCCCTGATGAATTATTGAGTTATGAAAACTTGACCTGGATTGATCTTAAGGCAAATCATCTTTCAGAGTCTATTCCTACCAATATTGAGAAGCTTTCTAAATTGGAAACTTTGATCCTTTCCTCTAATAACCTCAATGGTGAAATTCCACCTTCACTTATGAACATCACCAAACTTTCAAGATTTGCAGCAAATCTGAACAGTTTCACAGGTCATGTACCTCGTGGGATTACAACATATCTCACGAGTTTGGATCTTAGTTTTAATAACTTGTTTGGACCCATTCCAGAAGACCTTTTATCTCCATCACAATTGCAGGTTGTAGATTTGTCCAATAATAGGTTAAATGGGTCATTACCCACAAAAGTTTCTAAAAACTTGTTCAGGTTGAGGCTTGGGGGCAATCATCTGAGCGGAAACATTCCTTCAGTTGCTTTTGCAGCAGTTCGAAATTTGACATACTTGGAGCTGGATGACAATGACTTGATCGGATTGATACCGGCTGAATTGGCTTCTTGCAGGAATTTGGCATTGTTGAATTTAGCTCATAATCAGTTGAGTGGTGTATTGCCGCCACAGCTTGGTAATCTTGACGATCTTCAAGTCTTGAGGCTTCAATCGAACAAGCTCAATGGTACAATCCCAATTCAAATTGGCCAACTTCATAAGTTGTCAATACTGAATTTGAGCTCCAATTCTCTGGGTGGATCAATTCCATCTGAGATTTCAAATTTGAGCAGTCTTACATTCCTGAACTTGCAGAGCAACAATCTGAGTGGTTCCATACCGGCATCTGTTGACAACTTGAAATCTCTTTTAGAACTCCAACTTGGGCAAAACCAGCTAAGTGGTGTGATTCCAAGCATGCCATTGAGTCTGCAGGTTTCATTGAATCTTAGTAGCAACCACTTTAGTGGTCCTATTCCTATCAGTTTTCGTACTTTGGATAGCCTGGAAGTCTTGGATCTCTCAAATAACGAATTTTCTGGTCCAATTCCCGATTATCTAACTGGAATGTCGGCTTTGACACAGTTGTTACTTTCTAACAATCAGCTGACTGGTGAAATTCCAAAATTTAGTCAACATGTTCATCTTGAATATAGTGGAAATAATGTGATAAATACTACTGCACAGGAAAACCCAATACCCAACACTGCCTCTAGAAAGGGAATATCTGTTGCTGTGGCTATTCTCATTGCAATTGTGGCTGCTATTTTTCTTGTTGGCCTTGTCACCCTGCTGGTTGTGTCAGTGTCACGACACTATTACAGGGTTAATGATGAGCATTTACGGTCAAGAGAAGATCATCAGCATCCTCAGGTCATCCAAAGTAATTTATTAACTCCTAATGGAATACACAGATCAAACATTGACTTCTCCAAAGCCATGGAAGCTGTTGCTGAAACATCAAATGTTACTCTGAAAACAAGGTTTTCGACTTATTATAAGGCCATCATGCCATCCGGATCAATCTATTTTGTCAAGAAACTGAACTGGTCTGACAAGATATTGCCAGTGGGAAGTCATGATAAATTTGAGAAAGAGCTAGAAGTTTTGGCAAAATTGAACAATTCAAATGTCATGACTCCTTTAGGCTATGTTCTGTCCACTGATACTGCTTATATACTTTATGAGTTTATCTCAAATGGCTCCCTCTTTGATGTTCTTCATGGAAGCATGGGTTCCACTTTAGATTGGGGTAGCAGATACAGTATAGCCGTTGGAGTGGCTCAAGGACTTTCTTTTCTTCATGGATTCGCCTCTAGTCCAATACTACTTCTTGACCTGTCAAGTAAAAGTATTATGCTGAAGTCCCTCAAGGAGCCTCTAGTTGGGGATATCGAACATTACAAGGTGATTGATCCCTCAAAGAGTACAGGGAATTTTTCTGCAGTTGCTGGTTCAGTTGGTTATATTCCTCCAGAGTATGCATACACAATGACAGTAACAATGGCTGGGAATGTCTACAGCTTTGGTGTCATTCTGCTTGAACTGCTGACGGGAAAACCTGCAGTGACTGAGGGAACAGAATTGGTCAAGTGGGTTTTGCGTAATTCAACAAACCAGGATTACATTCTTGATTTTAATGTCAGTAGAACATCACAAGCAGTCAGAAACCAGATGCTTGCAATTCTTGAGATTGCTCGTGTTTGTGTTGGTACATCCCCAGAATCAAGACCAAAGATGAAGAGTGTGCTACGAATGCTCTTAAATGCTAGATGA 2844 0.4008 MGRYDQYIPTSFLCIFFFFCFCPMVLSLLSQNQTETMNNLSKILAPPVPWNGSKPPCAWKGVTCDSTNSSVIGIDLSGFSITPSDFLPLVCKIETLEHLNVSNNRLSSIPDGFITECGKIKGLKLLNFSGNRLGGDLPTFHEFDALESLDMSFNKLGGNIVIQLDGLVSLKSLNLAFNNFTGSLPTKLGKSMVLEQLVLSNNHFDGKIPDELLSYENLTWIDLKANHLSESIPTNIEKLSKLETLILSSNNLNGEIPPSLMNITKLSRFAANLNSFTGHVPRGITTYLTSLDLSFNNLFGPIPEDLLSPSQLQVVDLSNNRLNGSLPTKVSKNLFRLRLGGNHLSGNIPSVAFAAVRNLTYLELDDNDLIGLIPAELASCRNLALLNLAHNQLSGVLPPQLGNLDDLQVLRLQSNKLNGTIPIQIGQLHKLSILNLSSNSLGGSIPSEISNLSSLTFLNLQSNNLSGSIPASVDNLKSLLELQLGQNQLSGVIPSMPLSLQVSLNLSSNHFSGPIPISFRTLDSLEVLDLSNNEFSGPIPDYLTGMSALTQLLLSNNQLTGEIPKFSQHVHLEYSGNNVINTTAQENPIPNTASRKGISVAVAILIAIVAAIFLVGLVTLLVVSVSRHYYRVNDEHLRSREDHQHPQVIQSNLLTPNGIHRSNIDFSKAMEAVAETSNVTLKTRFSTYYKAIMPSGSIYFVKKLNWSDKILPVGSHDKFEKELEVLAKLNNSNVMTPLGYVLSTDTAYILYEFISNGSLFDVLHGSMGSTLDWGSRYSIAVGVAQGLSFLHGFASSPILLLDLSSKSIMLKSLKEPLVGDIEHYKVIDPSKSTGNFSAVAGSVGYIPPEYAYTMTVTMAGNVYSFGVILLELLTGKPAVTEGTELVKWVLRNSTNQDYILDFNVSRTSQAVRNQMLAILEIARVCVGTSPESRPKMKSVLRMLLNAR 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02258 947 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 31 186 - -
Pumo6g02258 947 SUPERFAMILY RNI-like 255 581 - -
Pumo6g02258 947 Gene3D Ribonuclease Inhibitor 438 499 IPR032675 -
Pumo6g02258 947 Gene3D Ribonuclease Inhibitor 286 331 IPR032675 -
Pumo6g02258 947 SMART LRR_typ_2 93 116 IPR003591 -
Pumo6g02258 947 SMART LRR_typ_2 239 263 IPR003591 -
Pumo6g02258 947 SMART LRR_typ_2 476 499 IPR003591 -
Pumo6g02258 947 SMART LRR_typ_2 310 337 IPR003591 -
Pumo6g02258 947 SMART LRR_typ_2 522 545 IPR003591 -
Pumo6g02258 947 SMART LRR_typ_2 452 475 IPR003591 -
Pumo6g02258 947 SMART LRR_typ_2 546 569 IPR003591 -
Pumo6g02258 947 SMART LRR_typ_2 167 191 IPR003591 -
Pumo6g02258 947 SMART LRR_typ_2 428 451 IPR003591 -
Pumo6g02258 947 Gene3D Phosphorylase Kinase; domain 1 640 753 - -
Pumo6g02258 947 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 283 582 - -
Pumo6g02258 947 SUPERFAMILY Protein kinase-like (PK-like) 685 943 IPR011009 -
Pumo6g02258 947 ProSiteProfiles Leucine-rich repeat profile. 95 116 IPR001611 GO:0005515
Pumo6g02258 947 Pfam Protein kinase domain 685 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g02258 947 Gene3D Ribonuclease Inhibitor 188 285 IPR032675 -
Pumo6g02258 947 PRINTS Leucine-rich repeat signature 522 535 - -
Pumo6g02258 947 PRINTS Leucine-rich repeat signature 312 325 - -
Pumo6g02258 947 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 187 280 - -
Pumo6g02258 947 Pfam Leucine rich repeat 95 156 IPR001611 GO:0005515
Pumo6g02258 947 Pfam Leucine rich repeat 503 559 IPR001611 GO:0005515
Pumo6g02258 947 Pfam Leucine rich repeat 407 465 IPR001611 GO:0005515
Pumo6g02258 947 Pfam Leucine rich repeat 333 393 IPR001611 GO:0005515
Pumo6g02258 947 ProSiteProfiles Protein kinase domain profile. 674 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g02258 947 Gene3D Ribonuclease Inhibitor 27 187 IPR032675 -
Pumo6g02258 947 Gene3D Ribonuclease Inhibitor 500 591 IPR032675 -
Pumo6g02258 947 Gene3D Ribonuclease Inhibitor 332 437 IPR032675 -
Pumo6g02258 947 Gene3D Transferase(Phosphotransferase) domain 1 754 947 - -
Pumo6g02258 947 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 642 753 - -
Pumo6g02258 947 Pfam Leucine Rich repeat 286 298 IPR001611 GO:0005515
Pumo6g02258 947 SUPERFAMILY L domain-like 53 327 - -
Pumo6g02258 947 FunFam leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 754 947 - -
Pumo6g02258 947 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 216 943 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02258 Pumo-Chr6 42676897 42680844 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02258 146 947 Receptor kinase-like Gene Family AT2G41820 38.517 5.46e-155 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo6g02258 Pkinase 5.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02258 - - gmx:100796647 1452.57