Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02248 ATGTTCAATGTGTCCTTATTTCAGTATGAAGACATTGTGCAATTGGAATGGCTGTCCAATTTTGTGGAGGACTCTTTCTCTGGTGGGAGCCTCACCATGAAGAAAGAGGAGCCACAATGCACCACCACCACCAAGGAGGACATAGCTCATGCCCAATTCCAGACAGCAAGCCCGGTCTCCGTCCTCGAAAGCAGCAGCTTCTGCTCCGGCGAGAAGGCTGCACCTCGCAGCCCGGAGATTTACATCCCCGTGCCATGTGGACGCGCGCGCAGCAAGCGCCCGCGCCCTGCAACCTTCAATCCCCATCCAGTGATGCAGCTCATCTCCCCTGCATCCTCCACCGGCGAGAACACGCAGCACAATGCTGCCACCACCACCTCCAAGGCCTCATCGGATTCCGAGAATTTCGCCGAGTCAGTGGTCAAGACACCAAAGCAGGCTTCCGGGGAGCACAAGAAGAAAAAAAAGATCAAAGTGACCTTCTCATCTGGTCAAGAGCAGAATGCACCATCACAGGCAGTTAGGAAATGCCTGCACTGTGAGATAACCAAGACACCACAGTGGAGGGCCGGGCCGATGGGGCCGAAAACACTCTGCAATGCCTGTGGCGTGCGCTACAAGTCAGGCCGGCTGTTCCCCGAATACCGCCCTGCAGCGAGTCCAACGTTTTGTGCGGCCGTGCACTCCAACTCCCATAAGAAGGTCCTTGAAATGAGAAACAAGACAGGCACCAAATCTAGCTTTGCAACTGATTCAGCTGCCTCACCAGAACTTATTCCAAACACTAACAGCAGCCTCTCCCTTGAGTACATGTGA 816 0.5441 MFNVSLFQYEDIVQLEWLSNFVEDSFSGGSLTMKKEEPQCTTTTKEDIAHAQFQTASPVSVLESSSFCSGEKAAPRSPEIYIPVPCGRARSKRPRPATFNPHPVMQLISPASSTGENTQHNAATTTSKASSDSENFAESVVKTPKQASGEHKKKKKIKVTFSSGQEQNAPSQAVRKCLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCAAVHSNSHKKVLEMRNKTGTKSSFATDSAASPELIPNTNSSLSLEYM 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02248 271 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 175 234 - -
Pumo6g02248 271 MobiDBLite consensus disorder prediction 108 142 - -
Pumo6g02248 271 FunFam GATA transcription factor 165 255 - -
Pumo6g02248 271 MobiDBLite consensus disorder prediction 108 168 - -
Pumo6g02248 271 CDD ZnF_GATA 176 223 IPR000679 GO:0006355|GO:0043565
Pumo6g02248 271 PANTHER GATA TRANSCRIPTION FACTOR 10 254 - -
Pumo6g02248 271 SMART GATA_3 171 221 IPR000679 GO:0006355|GO:0043565
Pumo6g02248 271 ProSiteProfiles GATA-type zinc finger domain profile. 171 207 IPR000679 GO:0006355|GO:0043565
Pumo6g02248 271 Gene3D - 171 221 IPR013088 GO:0006355|GO:0008270
Pumo6g02248 271 Pfam GATA zinc finger 177 210 IPR000679 GO:0006355|GO:0043565
Pumo6g02248 271 ProSitePatterns GATA-type zinc finger domain. 177 202 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02248 Pumo-Chr6 42379899 42381477 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02248 140 261 C2C2-Gata Transcription Factor Family AT3G54810 51.064 9.74e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo6g02248 GATA 7.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02248 - - gmx:100792644 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02248 6 42379899 42381477 Pumo3g01299 3 20638140 20640185 PCT