Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02227 ATGGAAATTCAATTCCAGCATCCAAAGCAGCACCACTTGAGAGCAAGCACTTCAAAAGGAGGCAAATTCAAAGGGAGAAACAACAAAACCAATAAGAGCAAGTATGTTGGGGTGAGGCAAAGAGCATCAGGGAAATGGGTTGCTGAGATCAAAGACACAACACAAAAGATAAGAATGTGGCTTGGCACATATGAGACAGCAGAGGAAGCAGCCAGGGCTTATGATGAAGCTGCATGCCTCCTTCGTGGATCCAACACTCGCACCAACTTCATCACACGTGTGTCCTTTGATTCCCCTCTTGCTTCACGGATTCAGAATCTCCTCAACAACAGAAAAGGTACCAAAACCAAACAAGAAGAACAAGATGTGGAAACATGTGCCACAAGGGTCAACGGCAACCAACGAGGATCGAGTCTAGCAGAAGGAGTTAGTACCCCACAACACGAGGAACTAAGGTTTGAATCTTCTTCGTTGGAAGAAGTGTCCATATTTAGTGTCCAACCGTACCTTAACCTCAATCAGGATTGCCTCCAAAAGAAGATACCTGTGGAAAACCAGAAGAAAAGAAAGGTCAACAACACCACTAGTAGTGGTAGTACTAGTAATAGTACTAATTCAAGCAATAGTGACACATGTGAAAACGCACTTTCTAGTGAGACAACAACCCAAAACACACAACTATTTGATGATGATGATGATGCTTATAGACCTGATTTGAGCAATTTCATGGGGTCTGAGTCAGGTTCTCAATCCAATCCTTCATGGGGCTTTGAAGCTGTTTTAGATCGTTTTCCCTTTGGCCAAGTAATGGATATAGCAAACCTGCCTGATGTAGCTGGCTTGGAGCTTCCAGATTTTGAAAGGATGAAGGTTGAAAGACAAATATCAGCTTCACTTTATGCAATTAATGGTGTGCAAGAGTACATGGACACTGTTCAAGACTCTAATAATGGAGCTATCTGGGATCTTCAACCCTTGTGTTCATTTTTGTGTTAA 996 0.4257 MEIQFQHPKQHHLRASTSKGGKFKGRNNKTNKSKYVGVRQRASGKWVAEIKDTTQKIRMWLGTYETAEEAARAYDEAACLLRGSNTRTNFITRVSFDSPLASRIQNLLNNRKGTKTKQEEQDVETCATRVNGNQRGSSLAEGVSTPQHEELRFESSSLEEVSIFSVQPYLNLNQDCLQKKIPVENQKKRKVNNTTSSGSTSNSTNSSNSDTCENALSSETTTQNTQLFDDDDDAYRPDLSNFMGSESGSQSNPSWGFEAVLDRFPFGQVMDIANLPDVAGLELPDFERMKVERQISASLYAINGVQEYMDTVQDSNNGAIWDLQPLCSFLC 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02227 331 Gene3D AP2/ERF domain 33 93 IPR036955 GO:0003700|GO:0006355
Pumo6g02227 331 CDD AP2 33 90 IPR001471 GO:0003700|GO:0006355
Pumo6g02227 331 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Pumo6g02227 331 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 29 295 - -
Pumo6g02227 331 MobiDBLite consensus disorder prediction 188 228 - -
Pumo6g02227 331 MobiDBLite consensus disorder prediction 183 252 - -
Pumo6g02227 331 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Pumo6g02227 331 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Pumo6g02227 331 MobiDBLite consensus disorder prediction 129 150 - -
Pumo6g02227 331 MobiDBLite consensus disorder prediction 12 29 - -
Pumo6g02227 331 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Pumo6g02227 331 FunFam ethylene-responsive transcription factor RAP2-11 33 92 - -
Pumo6g02227 331 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Pumo6g02227 331 MobiDBLite consensus disorder prediction 129 144 - -
Pumo6g02227 331 Pfam AP2 domain 33 83 IPR001471 GO:0003700|GO:0006355
Pumo6g02227 331 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02227 Pumo-Chr6 41745877 41747216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02227 29 109 AP2-EREBP Transcription Factor Family AT5G19790 77.778 9.54e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo6g02227 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02227 K09286 - gmx:100792432 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02002 5 55692613 55693434 Pumo6g02227 6 41745877 41747216 PCT