Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02206 ATGGACATGGATGTTTGCCGAAATGTATCAGTTTCAAGTGAGTGTCAGCAAGAGCTTCCCACCCTTGATGACCTTTTCTCTCATCAGAACACGGAAGTGGATTTTGGCATGGAATGGTTGTCAGTGTTTGTGGAGGACTGTTTTTCTAGTAGGCCAAGTTGCCTCTTGGCACCCCCTGGTGTTCAAACCACAAGCACCAGCACCAAGCCTTCAAGCACAATGCAAAGGCCCCAACAAAGCCACTGTCCCTTGCAGAACTTTGCTGTGCCAGGGAAAGCCAGGAGCAAGAGGAAGAGGCTCTCAGCCCCCAGAACAAAAGACACTCTAAGCACATGGTCACAACAGCACTTCACCACACAAAGTGAAGGATTGAGTTCTGACCCTCCTCTTTTGAAACAAGCCTATTGGTTGGCTGATAGTGAACTCATTGTCCCCAAGAAGAAGAAGGATGTTGAGCAAGAAGGGGTGATGACCAAAGTGGTGGAAGAAGAAGAAGGGGTTAATGTGGACCTTGTGGTGGTGAGGAAGGAGAAATTGGGAGAAGATTATAATTGTGAGGAGGGTGAAGTTAACAATAGTAGTAATAATAATGGACAGCAGCACCCAATTCCAAGAAGGTGCACACATTGTCTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTGGGGCCAAAAACACTATGCAATGCATGTGGGGTGAGGTACAAGTCTGGAAGGTTGTTGCCAGAGTATAGGCCAGCCAAGAGTCCTACTTTTGTAAGCTATTTGCATTCCAACTCACACAAGAGAGTCATGGAGATGAGAATGGGTGTTCTCTCTACAGACAAGTAG 834 0.476 MDMDVCRNVSVSSECQQELPTLDDLFSHQNTEVDFGMEWLSVFVEDCFSSRPSCLLAPPGVQTTSTSTKPSSTMQRPQQSHCPLQNFAVPGKARSKRKRLSAPRTKDTLSTWSQQHFTTQSEGLSSDPPLLKQAYWLADSELIVPKKKKDVEQEGVMTKVVEEEEGVNVDLVVVRKEKLGEDYNCEEGEVNNSSNNNGQQHPIPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKRVMEMRMGVLSTDK 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02206 277 Gene3D - 197 272 IPR013088 GO:0006355|GO:0008270
Pumo6g02206 277 CDD ZnF_GATA 206 253 IPR000679 GO:0006355|GO:0043565
Pumo6g02206 277 MobiDBLite consensus disorder prediction 58 85 - -
Pumo6g02206 277 ProSiteProfiles GATA-type zinc finger domain profile. 205 237 IPR000679 GO:0006355|GO:0043565
Pumo6g02206 277 SMART GATA_3 201 255 IPR000679 GO:0006355|GO:0043565
Pumo6g02206 277 FunFam GATA transcription factor 195 276 - -
Pumo6g02206 277 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 203 265 - -
Pumo6g02206 277 ProSitePatterns GATA-type zinc finger domain. 207 232 IPR000679 GO:0006355|GO:0043565
Pumo6g02206 277 PANTHER GATA TRANSCRIPTION FACTOR 20 272 - -
Pumo6g02206 277 Pfam GATA zinc finger 207 241 IPR000679 GO:0006355|GO:0043565
Pumo6g02206 277 MobiDBLite consensus disorder prediction 90 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02206 Pumo-Chr6 41106088 41107702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02206 37 269 C2C2-Gata Transcription Factor Family AT4G32890 38.333 2.69e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo6g02206 GATA 1.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02206 - - gmx:100776805 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02027 5 55985208 55986338 Pumo6g02206 6 41106088 41107702 PCT