Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02202 ATGGAGAATGATATAGAGGGTGTGCATTGGTGCAACATATGCTCTAAAATGGTGAATCCAATGAGTGATGCTGAGAACATATGCCCGTTTTGTGAGACAGAATTTTCTGAGGTAATGGACAACCTAAGGGACCAGAATGATGTTATTGACTTGAGGTCAGCTTGGGTGTTCTCACTTTATGCCCCAATTTTTCTTGGTTTGATGGGTGCTTTCAGCCCTTCCCTTGCAAGAATTGCTCCACATGGAGGAAGCAGCTCAAGGGGGGTGGAAGAAGAGGTTGAGCAAGAGAGGGAAAATGAGCTTGTGCTTGGGAGAAGGAGAAGAACTTCAACTTACATGATGAACCTCTTTCGCGGTCTTCATGTGAGGATGGTGTCTGAACTTGAAAACCCTGAAGACAATAGGAACATGGATGGCAGCAGCATACTTGTGATTGATCCCTTCAATGAAGGTGCATTGATTGTGAGAGGCCCTAACTTGAACCACACAAGTAGTCCAAATGAGAACAATGCTGTAGGAAGCTCCTTGAATGATCTTGTGGTAGGATCTGGCTTTGATTTGTTGCTACAGCATTTGGCACAGATTGGTCCTGGTGGGTATTCAAGTGTGAACCCTCCAGCACAGAAGGCAGCAATTGAGGCATTGCCTAGTGTGACCAGTGAGGAGAAGTTGCAGTGCACTGTGTGCTTGGAGGATGTTGAGGTTGGGAGTGAAGCAAAGGAGATGCCATGTAAGCATAAGTTCCATGGTGACTGCATTGTCTCATGGCTCAAACTTCATGGCTCTTGTCCAGTTTGCAGGTTTCAGATGCCATCTGAGGATTCAACTCTTGAAGCCAATGTGGGAATTGGAAATGGGGACAATCAGAACAGTGAGCTAGTCAGAGCTGGAGAAGAGAGACCAAGAAATGGAAGGAGGAATTGGTTTCCAGTGCTGCAATCATTTAACAATTTTCTTCCTTCTCCTTGA 969 0.4551 MENDIEGVHWCNICSKMVNPMSDAENICPFCETEFSEVMDNLRDQNDVIDLRSAWVFSLYAPIFLGLMGAFSPSLARIAPHGGSSSRGVEEEVEQERENELVLGRRRRTSTYMMNLFRGLHVRMVSELENPEDNRNMDGSSILVIDPFNEGALIVRGPNLNHTSSPNENNAVGSSLNDLVVGSGFDLLLQHLAQIGPGGYSSVNPPAQKAAIEALPSVTSEEKLQCTVCLEDVEVGSEAKEMPCKHKFHGDCIVSWLKLHGSCPVCRFQMPSEDSTLEANVGIGNGDNQNSELVRAGEERPRNGRRNWFPVLQSFNNFLPSP 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02202 322 FunFam E3 ubiquitin-protein ligase RNF181 198 273 - -
Pumo6g02202 322 SUPERFAMILY RING/U-box 216 273 - -
Pumo6g02202 322 ProSiteProfiles Zinc finger RING-type profile. 226 267 IPR001841 -
Pumo6g02202 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 273 IPR013083 -
Pumo6g02202 322 SMART ring_2 226 266 IPR001841 -
Pumo6g02202 322 Pfam Ring finger domain 225 267 IPR001841 -
Pumo6g02202 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 129 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02202 Pumo-Chr6 41032336 41033304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02202 89 285 C3H Transcription Factor Family AT1G26800 30.808 3.28e-23 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02202 - K11982 gmx:100790855 616.305