Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02198 ATGTACTACCAGCACCAGCAACAAGCTAAGAACATGCATGCTTTAAGGATGCACAGCCCCACTGAGAGGCATATGATGATGCAAGGAGGCAATGGAACTGGTGATTCAGGACTTGTTCTATCAACTGATGCTAAGCCTAGGCTAAAATGGACACCAGATCTTCATGAAAGGTTCATAGAAGCAGTCAACCAACTTGGAGGAGCAGACAAAGCTACTCCAAAAACAGTATTGAAACTGATGGGGATTCCTGGACTCACTCTCTACCACTTAAAGAGTCATCTACAGAAGTACAGGATCAGTAAAAATATGCACGGACAAACCAATACTAGCAACAATAAAATTGCATCAACCACAGAAGCAGCAGGCAGAATGTCAGAAGCAAGTGGAATTCAAATGAAACATTTAAGCATAGGCCTACAGACAAACAATATCAGCCCTCAATCCAGAAATTCAGAAATAAATGATGCGTTACAGATGCAAATTGAAGTACAAAGAAGACTGCATGAGCAGCTTGAGGTACAGAGACACTTACAGCTAAGGATAGAGGCACAAGGGAAGTACCTTCAGGCAGTGCTGGAAAAAGCACAAGAGACACTAGGAAGACAAAATTTAGGTGCTGAGGGAGTTGAAGCTGCCAAGGTTCAACTATCTGAACTGGCATCCAGAGTATCCCCTCAAAACCTTGACTCAAAATTTTCAGAACTGAAAGAATTGCAGGTTTTGTGGCCTCAGCAAACACAAGAGGGCCAAGCCACTGATTGTTCAATGGGAAGTTTCTTTACCTACAGTGAGGAATCTCAAAGAGACAGAGAAACACAAAACATGAGCCTGAATTTGAGGGCCTATAATGGCCCTCCATTTGCAGTTTCAAAAGGGTGTGCAGAAGAGCCTATGCATTTAAAGCCTGATCACACATTGTGTGATGAAGTGAAGGAGAATATGATGTTTTTTTCCTCATCAAGTGATAGTAAAGTAGTGAAGGGAAATTTTTTACCAGAAAGGCCCTCAAGCCTCTTATCCATGAATGTAGGAGTTCAAGAAGAGGAAAATTTTGGGAGAACAGCTGTTTCAAAGGAAGAAGGTTGGAAGGGGAGAGAGAACACTGAAACTGGGAGAGTTTTGAACCATGAGAAGATTTCTCAAGATTATAGACTTGCAAACTTTGAAGTGAAACTGGACCTGAATTCCCATGATGACAATGATGCTTCTTCCCACTGCCAACAGTTTGATTTGAATGGTTTCAGCTGGAATTGCTAG 1257 0.4193 MYYQHQQQAKNMHALRMHSPTERHMMMQGGNGTGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRISKNMHGQTNTSNNKIASTTEAAGRMSEASGIQMKHLSIGLQTNNISPQSRNSEINDALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGAEGVEAAKVQLSELASRVSPQNLDSKFSELKELQVLWPQQTQEGQATDCSMGSFFTYSEESQRDRETQNMSLNLRAYNGPPFAVSKGCAEEPMHLKPDHTLCDEVKENMMFFSSSSDSKVVKGNFLPERPSSLLSMNVGVQEEENFGRTAVSKEEGWKGRENTETGRVLNHEKISQDYRLANFEVKLDLNSHDDNDASSHCQQFDLNGFSWNC 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02198 418 Gene3D - 44 102 - -
Pumo6g02198 418 FunFam Myb family transcription factor 44 102 - -
Pumo6g02198 418 Pfam Myb-like DNA-binding domain 47 98 IPR001005 -
Pumo6g02198 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Pumo6g02198 418 Coils Coil 154 174 - -
Pumo6g02198 418 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 16 270 IPR044848 GO:0003700
Pumo6g02198 418 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
Pumo6g02198 418 NCBIfam myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
Pumo6g02198 418 Pfam MYB-CC type transfactor, LHEQLE motif 152 198 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02198 Pumo-Chr6 41016683 41020120 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02198 77 417 G2-like Transcription Factor Family AT3G04030 48.538 8.12e-89 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo6g02198 Myb_DNA-binding 4.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02198 - - gmx:100786282 756.133