Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02194 ATGATGGAAGAGCCTGTTGTGGTTAACAAAGGAGATGATCATCATCAGCCTTTGGATTTGCCTCCAGGTTTCAGGTTCCACCCCACAGATGAAGAGATCATCACTTGCTACCTCACAGAGAAAGTGCTCAATAGAGCCTTCAGTGCAACTGCTATTGGGGAGGCTGATTTGAACAAGTGTGAGCCTTGGGACTTGCCCAAGAAAGCAAAGATGGGGGAGAAGGATTGGTACTTCTTTTGCCAAAGGGATAGGAAGTATCCAACAGGCACGAGGACCAATAGAGCAACCCAATCTGGGTATTGGAAGGCCACTGGCAAAGACAAAGAGATTTTCAAAGGGAAGAACAATCTTGTGGGGATGAAGAAGACCCTTGTCTTCTATAGAGGAAGAGCTCCAAAGGGAGAAAAGACAAATTGGGTTATGCATGAATTCAGATTGGAAGGCAAATTCGCATGTTACAACCTTCCCAAGGCTGCAAAGGAAGAATGGGTTGTGTGCAAGGTTTTCCACAAGATCAACACCACAGATGTTAACAAAAGTGTACTCCCAATAAATAACCCTGGCCTTCTGAGAATCAACTCATCAATTGGAGAAGATCTATTTGATTTCTCTTCTCTCCCACCTCTAGTGGATCCTCTCTTTGACCAAACCTCAAACCAGCACATTGACAATGATAATTTCAAGGGTACTACTAATAATAGTACTAACACACCTTCATCTTCATCAGCTAAACCACCACCATCAAGTGGCTACTATCTTCCCAACTTCATCAACAACAACAATCAGCACATGCTTATGATGAAGCCAGAAGAGCACAGAACCTATGAGATTCCCACCAATAACAACTATGCCACCACCAGCCAAGTGAATTTCAGTACTAATAACAACCCAATGGGAATTAGCACAAGCAATAATAATACCCTTCTAATTTCTCAGCCTCAAATTAGAACCCAAAATTCAACCTCACCCTTCAACATGTTACAAGACTATTATATGCACCAAGGCAAACTACAATGCAAGATGGAGCAATTCTCCAACACCAATAACCAACCTGTGGTGAGTGCCTCCCAAGACACGTGCCTGAGCAATGACAGAAACACTGACACTTCCTCGGTGGTTTCAACAAAGCAAGACAATATGGGAAGGAACAAGGCATTGTACGAGGATAATCTTGAAGGTCCTTCATCAGTTGCTACCCTCTCAGATTTGGAATGCCTGTGGGATGATTACTGA 1233 0.4323 MMEEPVVVNKGDDHHQPLDLPPGFRFHPTDEEIITCYLTEKVLNRAFSATAIGEADLNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGTRTNRATQSGYWKATGKDKEIFKGKNNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFACYNLPKAAKEEWVVCKVFHKINTTDVNKSVLPINNPGLLRINSSIGEDLFDFSSLPPLVDPLFDQTSNQHIDNDNFKGTTNNSTNTPSSSSAKPPPSSGYYLPNFINNNNQHMLMMKPEEHRTYEIPTNNNYATTSQVNFSTNNNPMGISTSNNNTLLISQPQIRTQNSTSPFNMLQDYYMHQGKLQCKMEQFSNTNNQPVVSASQDTCLSNDRNTDTSSVVSTKQDNMGRNKALYEDNLEGPSSVATLSDLECLWDDY 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02194 410 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 301 - -
Pumo6g02194 410 MobiDBLite consensus disorder prediction 214 251 - -
Pumo6g02194 410 FunFam NAC domain-containing protein 100-like 29 175 - -
Pumo6g02194 410 Pfam No apical meristem (NAM) protein 21 146 IPR003441 GO:0003677|GO:0006355
Pumo6g02194 410 ProSiteProfiles NAC domain profile. 20 171 IPR003441 GO:0003677|GO:0006355
Pumo6g02194 410 SUPERFAMILY NAC domain 16 171 IPR036093 GO:0003677|GO:0006355
Pumo6g02194 410 Gene3D NAC domain 29 175 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02194 Pumo-Chr6 40954690 40957190 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02194 1 408 NAC Transcription Factor Family AT5G18270 47.805 7.38e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo6g02194 NAM 1.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02194 - - gmx:100813376 684.1