Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02189 ATGGGAACCCCACAATCCAACAACTTGCCACCAGGGTTTAGGTTCCACCCTACAGATGAAGAGCTCATTCTTCACTACCTAAGGAAGAAGGTTGCCTCTATTCCCTTGCCAGTTTCCATCATTGCTGAGGTTGATATCTACAAGTTTGATCCATGGGAGCTACCAGCTAAGGCCGCGTTTGGGGAGAAAGAGTGGTACTTTTTCAGTCCTAGAGACCGCAAGTACCCAAATGGAGCCAGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAGGCCACAGGCACTGATAAGAACATAGTGGCATCATCTCAAGGAGGAGTGAGAGAGCACTTTGGTGTGAAGAAGGCTTTGGTGTTCTACAAAGGAAAACCCCCAAAGGGTGTCAAGACCAACTGGATCATGCATGAATATCGCCTTGTTGACACCAATAGACCCATTAGGATCAAAGACACCTCCATGAGGCTGGATGATTGGGTACTATGCCGGATATACAAGAAGCCCAAACATGTTGTATCTTCAACCACAGAGGCAGCAGCAACAGTGCAAGTGAATGAGCAAGATCAAGCAGAAGAAGAGGACCAAATCATCAAAGACACCCTTTTACCAATCTCCAAGAATAGTACCACTCTTGTCCCTCCTCCACAGGCCACAACACTCTTATCTCAAAAATCCTTATCCTTCTCCAATCTCTTGGATGCCACAGACTACTCCATGCTCAGCACCATCTTATCTGAGAACCACTCCAATTACCCAACTCCAAGTGAAGGCTTGTTCAATTGTGAGAATCTGGATCAAGAAGAATACCCCCAAAACTACTACTACAACAACAACAATAATAATAACAATAACAATAGCTACTTGTTTCAGAAGAACAACCACCCTTCAGTAGTACTTACCCACATGGAAAACATGACCACCAGGCCCAAACGCCACCTTTCAAACATGGATGAGGACATGCTATACCCTTCAAAGAAGTATCATAGTTCTTCCTCTTGCAATTTCCCTAACACCAACCTCCAAAACCAGAATCCACAAAGGAATTTCGTGTTCAAGCAGCCACTCATGAATCAGCAATTACTTCCGGGTCCTCAATTTCTTCGATTTCAGTGA 1110 0.4505 MGTPQSNNLPPGFRFHPTDEELILHYLRKKVASIPLPVSIIAEVDIYKFDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKNIVASSQGGVREHFGVKKALVFYKGKPPKGVKTNWIMHEYRLVDTNRPIRIKDTSMRLDDWVLCRIYKKPKHVVSSTTEAAATVQVNEQDQAEEEDQIIKDTLLPISKNSTTLVPPPQATTLLSQKSLSFSNLLDATDYSMLSTILSENHSNYPTPSEGLFNCENLDQEEYPQNYYYNNNNNNNNNNSYLFQKNNHPSVVLTHMENMTTRPKRHLSNMDEDMLYPSKKYHSSSSCNFPNTNLQNQNPQRNFVFKQPLMNQQLLPGPQFLRFQ 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02189 369 Pfam No apical meristem (NAM) protein 10 139 IPR003441 GO:0003677|GO:0006355
Pumo6g02189 369 SUPERFAMILY NAC domain 6 166 IPR036093 GO:0003677|GO:0006355
Pumo6g02189 369 ProSiteProfiles NAC domain profile. 9 166 IPR003441 GO:0003677|GO:0006355
Pumo6g02189 369 FunFam NAC transcription factor 56 18 171 - -
Pumo6g02189 369 Gene3D NAC domain 18 171 IPR036093 GO:0003677|GO:0006355
Pumo6g02189 369 PANTHER NAC TRANSCRIPTION FACTOR 56 9 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02189 Pumo-Chr6 40577763 40580560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02189 7 249 NAC Transcription Factor Family AT3G04070 61.382 4.65e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo6g02189 NAM 2.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02189 - - gmx:100817074 572.392