Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02179 ATGGTTAGTGCAATAAAAGCAGCCATTGGAGATTTAGTGTTGACTTTCTTGTGGGTCTTCTTTTCTTCCATGCTGGGATTGGCCACCGATGCCATAACAACAGCGCTTGATCTCCATCACGTGTCTTTCAACGGTTTTGCATACGCTCCCGCTGTGATCATCACTTCACTCATCTTTATCCTCGTCACGGTCTTCACTGTCGTTGGCAATGCCTTGGGTGGTGCCAGTTTCAACCCCACCGGCAATGCTTCATCCTACGCCGCTGGTCTTGGCTCCGACACCCTTTTCTCAATGGCTCTCCGGTTCCCTGCTCAGGCACTGGGTTCAGTGGGTGGTGTTCTGGCAGTTATGGAGGTTATGCCAGCGAAATACAGGCACTTGATTGGAGGGCCTTCTTTGAAGGTTAGCTTGCATACTGGAGCTATTGCAGAGGGGGTGCTGACGTTTATAATCACCTTTGCTGTTCTCCTCATCATGATCAAGGGTCCTCGTAGTGAGGCGGTGAAGACTTGGTTGATGGCAATCTCAACTGTGGTTTTGATCACTGCTGGTGCTGCTTACACAGGACCAGCAATGAATCCTGCCTTTGCATTTGGTTGGGCATACTTTGAGAACTGGCACAACACATGGGACCAATTCTATGTTTACTGGATTTGCCCATTCGTTGGATCAATTCTGGCTGCATGGCTGTTCCGTGTTGTCTTTCCCCCACCAGTGGTAAAGCAGAAGAAAGCCTGA 738 0.4959 MVSAIKAAIGDLVLTFLWVFFSSMLGLATDAITTALDLHHVSFNGFAYAPAVIITSLIFILVTVFTVVGNALGGASFNPTGNASSYAAGLGSDTLFSMALRFPAQALGSVGGVLAVMEVMPAKYRHLIGGPSLKVSLHTGAIAEGVLTFIITFAVLLIMIKGPRSEAVKTWLMAISTVVLITAGAAYTGPAMNPAFAFGWAYFENWHNTWDQFYVYWICPFVGSILAAWLFRVVFPPPVVKQKKA 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02179 245 Gene3D Glycerol uptake facilitator protein. 1 243 IPR023271 -
Pumo6g02179 245 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo6g02179 245 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo6g02179 245 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo6g02179 245 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo6g02179 245 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo6g02179 245 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo6g02179 245 PANTHER AQUAPORIN SIP1-1 4 243 IPR044222 GO:0015250
Pumo6g02179 245 SUPERFAMILY Aquaporin-like 3 238 IPR023271 -
Pumo6g02179 245 Pfam Major intrinsic protein 2 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo6g02179 245 FunFam Aquaporin SIP1-1 2 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02179 Pumo-Chr6 40375065 40379844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02179 2 245 Major Intrinsic Protein MIP AT5G18290 54.435 6.00e-85 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02179 K09875 - gmx:100803227 436.417