Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02149 ATGACTGATTCTGACGCCAATCACAATGACCCATCTCTCGCCACCGATGCTGATGCACTCGATGATGCAGGAGATGATGTCAAGTTGAAGTCTAGGGACCAAAGACTGGCTCTGCCAGGTGAGCCCAAGTGTATTATATGTGGCCGCTACGGTGAATACATATGTGATGAAACTGATGATGATGTTTGCAGTTTGGAGTGCAAACAAGCACTGCTTTGCAGGATTGCCAAATCGTCGTCTCCACCACCTAAAAAGATTCCTGCAGCTGATGAGTGCTTTTATGTTAGAGATGCTGATTACGAGTCAGGGACTGCATCTATGGCTAGTGATCTTAGAAAGAAACTTGACATTCATGTGAAGGGTGATGTAGTGGCACCGGTTTTGTCATTCTCTGCCTGTAATCTCCCTGACAAGCTTCTCCACAATATAGAAGCAGCAGGATATGACATGCCTACACCTGTCCAGATGCAAGCAATCCCTGCTGCTTTGACGGGCAAAAGCATGCTCGTTTTGGCCGATACAGGATCTGGGAAGTCTGCTTCGTTTCTTATTCCGATAGTTTCTCGTTGTGCGATTCATCGTCGACAATATGTTTCAGATAAGAAGAAGCCTTTAGTTTTGGTGTTAACACCTACCAGAGAACTCTGTATACAGGTTGAAGAGCATGCTAAGTTGCTTGGCAAGGGGTTGCCTTTCAAAACTGCTCTTGTGGTTGGTGGTGATGCCATGGCTGGACAACTCCATCGCATTCAACAAGGGGTGGAATTGATTGTAGGAACCCCAGGAAGACTTGTTGATCTTTTAATGAAGCATGAGATTGACTTAGATGATGTGATGACTTTCATTGTGGATGAAGTGGACTGTATGCTGCAAAAGGGCTTTAGAGATCCGGTCATGCAGATATATAGGGCTCTGTCACAACCTCAGGTCTTGATGTATTCTGCAACAATGTCTAATGATTTAGAGAAGATGATTAACACTCTGGCGAAAGGTACAGTGGTTATCTCTGTTGGAGAACCTAATAGACCAAATAAGGCTGTGAAGCAGCTAGCTATTTGGGTTGAGTCAAAGCAAAAGAAGCAGAAGCTGTTTGAAATTCTGGCAAGTAAGAAGCATTTTAAGCCACCTGTTGTAGTGTATGTGGGCTCCAGACTTGGGGCAGATCTCCTGGCTAATGCAATTACAGTTGCCACAGGAATTAAAGCAGTTTCAATTCATGGGGAGAAGTCTATGAAGGAAAGGAGAGAAATAATGCAGTCCTTTTTGGTGGGTGAGGTCCCAGTGGTTGTGGCTACTGGAGTTTTGGGTAGGGGGGTTGATCTACTTGGTGTAAGACAAGTGATTGTATTTGACATGCCTAATTCCATTAAGGAGTATGTACATCAAATTGGAAGGGCATCTAGAATGGGAGAGGAAGGTCAAGGCATAGTTTTTGTGAATGAGGAGAATAAGAATATCTTTGCAGAATTAATTGAAGTTCTGAAATCTGGTGGAGCAGCTGTGCCTCGGGAGCTTGCCAATTCACGGTATGCCACAGGAGTTTTCTCTGGTGGCAAGGGTTCAAAGAAGAGAAAGCATACAGGATGA 1587 0.4436 MTDSDANHNDPSLATDADALDDAGDDVKLKSRDQRLALPGEPKCIICGRYGEYICDETDDDVCSLECKQALLCRIAKSSSPPPKKIPAADECFYVRDADYESGTASMASDLRKKLDIHVKGDVVAPVLSFSACNLPDKLLHNIEAAGYDMPTPVQMQAIPAALTGKSMLVLADTGSGKSASFLIPIVSRCAIHRRQYVSDKKKPLVLVLTPTRELCIQVEEHAKLLGKGLPFKTALVVGGDAMAGQLHRIQQGVELIVGTPGRLVDLLMKHEIDLDDVMTFIVDEVDCMLQKGFRDPVMQIYRALSQPQVLMYSATMSNDLEKMINTLAKGTVVISVGEPNRPNKAVKQLAIWVESKQKKQKLFEILASKKHFKPPVVVYVGSRLGADLLANAITVATGIKAVSIHGEKSMKERREIMQSFLVGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQGIVFVNEENKNIFAELIEVLKSGGAAVPRELANSRYATGVFSGGKGSKKRKHTG 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02149 528 Pfam HIT zinc finger 42 68 IPR007529 -
Pumo6g02149 528 Pfam DEAD/DEAH box helicase 152 323 IPR011545 GO:0003676|GO:0005524
Pumo6g02149 528 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 128 156 IPR014014 GO:0003724
Pumo6g02149 528 FunFam DEAD-box ATP-dependent RNA helicase 41 24 81 - -
Pumo6g02149 528 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 335 IPR014001 -
Pumo6g02149 528 Gene3D - 338 511 IPR027417 -
Pumo6g02149 528 Pfam Helicase conserved C-terminal domain 359 470 IPR001650 -
Pumo6g02149 528 Gene3D - 94 337 IPR027417 -
Pumo6g02149 528 MobiDBLite consensus disorder prediction 1 21 - -
Pumo6g02149 528 Gene3D - 23 80 - -
Pumo6g02149 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 337 IPR027417 -
Pumo6g02149 528 SMART helicmild6 388 470 IPR001650 -
Pumo6g02149 528 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 125 499 - -
Pumo6g02149 528 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 346 509 IPR001650 -
Pumo6g02149 528 CDD SF2_C_DEAD 347 479 - -
Pumo6g02149 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 484 IPR027417 -
Pumo6g02149 528 SMART ultradead3 147 350 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02149 Pumo-Chr6 39371356 39374367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02149 129 490 Eukaryotic Initiation Factors Gene Family AT1G72730 31.608 5.74e-51 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02149 K19466 - gmx:100781473 956.822