Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02139 ATGGGTGGTGAAATTGATATGGACGATATCACAGTTGATGCAATAAGTTTTAGTTTTATTTGGGCAGTGGACAGTGCAATAAGGAGTGAGAGTGAGACTGCATCAAATTTGGGAGCATCCCCTGCTCATAGTTTTGGTTCAGTAGTGGACAGTGCGATAAGAAGTAGTAGTGCTAGTGAAGCAGATTTAGGAACATCACCAATGTGGGTTTTGCCTCTCCCATTACAGTCTTCTCCACACGCATGGTCAGAGAATGAAACTCCTGTCAGCGTGCTTAAGGAATCCAGCTATCTACCAACTGTTCTAAACCATGTTGATGATAAGAAGAGGACTGTTTCACGATTATTCACCTTGACTGAGCTTAAAGCGGCCACCAACAATTTCTCACTTCACAACAAGATTTTCGGTGTTGGAAGCATCGGTGATGTGTACAGAGGCAAACTCTTTGATGGTCGTGAGGTGGCTATCAAGAGGGCTGAAACAACCTGGTCTAGCAGGTCAAAGAGCAAGGAGTTTCAAGAGATGGAAATTTTTACCTTTGCGCTCCGCCTACACCACAAGCACTTGGTTGGGCTAGTTGGGTTCTGTCGAGAGGAAGGTGAAAGGCTCACGCTTTATGAGTACATGAAGAATGGGGCGTTGTCTGATCATTTGCATGACAAGAACAATGTGGACAAGGGTAGCAGTGTGTTGAATTGTTGGAAAATGAGGATCAAAATTGCTTTGGATGCTTCTCGGGGAATAGAATACCTTCATAATAATTATGAACGTATTCACAGAAATATCAAGTCTTCCAATATTCTTCTTGATGCTACTTGGACGGCAAGAGTATCTGATTTTGAATCGTCATCCATTTGTCCAAAAATTAACCATGATATAGTACTGGGAACCTTGGGATACCTTGATCCTGAGTACTTGTGTACAAGTTTGTTCAAAGCAAAGAGTGATGAGTATGGGCTTGGAGTTGTACTGCTTGAACTTTTAACGGGAAAGCCAACTATATTCAACTATGGGAAACATGGAAGCACCAATATGGTGAACTTTGCACGGCGTGCTATTTTGGCCGGAGAAATGTTGAAAATTTTGGATCCAAGGGTTGGACCACCGGGTGTGAATGAAGCCAAGGCATTGGAGTTAGTGGCCTATACCGCTATCCAATCTATCGATTTGCAAAGGAAAAATAGACTTACCATGGCTCACATGATGGTCAATTTGGAGAGTGCTTTGGCTATTTGTGATAGTTAG 1245 0.4265 MGGEIDMDDITVDAISFSFIWAVDSAIRSESETASNLGASPAHSFGSVVDSAIRSSSASEADLGTSPMWVLPLPLQSSPHAWSENETPVSVLKESSYLPTVLNHVDDKKRTVSRLFTLTELKAATNNFSLHNKIFGVGSIGDVYRGKLFDGREVAIKRAETTWSSRSKSKEFQEMEIFTFALRLHHKHLVGLVGFCREEGERLTLYEYMKNGALSDHLHDKNNVDKGSSVLNCWKMRIKIALDASRGIEYLHNNYERIHRNIKSSNILLDATWTARVSDFESSSICPKINHDIVLGTLGYLDPEYLCTSLFKAKSDEYGLGVVLLELLTGKPTIFNYGKHGSTNMVNFARRAILAGEMLKILDPRVGPPGVNEAKALELVAYTAIQSIDLQRKNRLTMAHMMVNLESALAICDS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02139 414 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 112 413 IPR044815 GO:0004674
Pumo6g02139 414 Gene3D Transferase(Phosphotransferase) domain 1 209 412 - -
Pumo6g02139 414 Gene3D Phosphorylase Kinase; domain 1 94 208 - -
Pumo6g02139 414 SUPERFAMILY Protein kinase-like (PK-like) 111 403 IPR011009 -
Pumo6g02139 414 ProSiteProfiles Protein kinase domain profile. 129 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g02139 414 Pfam Protein kinase domain 133 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02139 Pumo-Chr6 38950116 38951360 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02139 116 412 Receptor kinase-like Gene Family AT3G55950 55.799 3.89e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Pumo6g02139 Pkinase 1.4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02139 - - vra:106757051 382.489