Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02134 ATGAATCCCTACACGTCATCACCATCATCCTCCAAGTCCAAAAAGAAGCAAACGACAACACAAGATCAAAACCAACATGAAACGGCATGGGGAGGGAGGTACCTTGGCGTGAGGAGAAGGCCATGGGGAAGGTACGCGGCCGAAATTCGCGACCCTTCCACCAAGGAGAGGCATTGGTTAGGCACGTTCGACACCGCAGAAGAGGCTGCCCTGGCTTATGACAGGGCAGCCCGCTCCATGCGCGGGTCACGTGCCCGAACCAACTTCGTCTACCCGGACACTCCGCCGGGTTCCTCTGTCACCTCCATCCTCTCCCCGGACGAGCAAACCCAAACCCAAACCCAAATCCAAATCCACCAGGCCCAAGAAGAACTCTCCTCTCTATTCAACCCGAACTCGTTTCCACAACCCGACCCGAACCCGCAATTTTCCTTATGCGGATACTCGGGTATAACCAACACTCCCACATTTTCTGCCACCGAAGAAATTGCCTCATCCGGTGGCTATAGCTATAGTTATGGCTACACTGAAGGAGGAACCAACGTGGAGAGTTCACATTTTAAGCTCTTTGATGATGGTGAAACGCAGCTTCCACCGTTGCCACCGGATATCACAAGCTCCATGGGCTATGAAATGGGTCATGGGTTTTATGGAAACGATGTCGGGTTTACGGATCCAAGTTTTAATGTTAATGCTACCGGGTCGGGTTACCCGAATTCAGGGATTTGA 729 0.5226 MNPYTSSPSSSKSKKKQTTTQDQNQHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYPDTPPGSSVTSILSPDEQTQTQTQIQIHQAQEELSSLFNPNSFPQPDPNPQFSLCGYSGITNTPTFSATEEIASSGGYSYSYGYTEGGTNVESSHFKLFDDGETQLPPLPPDITSSMGYEMGHGFYGNDVGFTDPSFNVNATGSGYPNSGI 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02134 242 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Pumo6g02134 242 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Pumo6g02134 242 Pfam AP2 domain 34 82 IPR001471 GO:0003700|GO:0006355
Pumo6g02134 242 MobiDBLite consensus disorder prediction 1 33 - -
Pumo6g02134 242 FunFam Ethylene-responsive transcription factor 2 33 91 - -
Pumo6g02134 242 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
Pumo6g02134 242 CDD AP2 33 89 IPR001471 GO:0003700|GO:0006355
Pumo6g02134 242 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 119 - -
Pumo6g02134 242 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Pumo6g02134 242 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Pumo6g02134 242 MobiDBLite consensus disorder prediction 1 28 - -
Pumo6g02134 242 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02134 Pumo-Chr6 38860810 38861733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02134 9 105 AP2-EREBP Transcription Factor Family AT5G13910 79.381 4.17e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo6g02134 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02134 K09286 - gmx:100815668 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02087 5 57283875 57284717 Pumo6g02134 6 38860810 38861733 PCT