Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02131 ATGGTTCTTCAAAACGACATTGATTTGCTGAATCCTCCAGCTGAGTTGGAGAAGAGAAAGCACAAGCTTAAGCGTCTTGTTCAGTCACCAAACTCTTTCTTCATGGATGTTAAGTGCCAGGGCTGCTTCAACATAACAACTGTGTTTAGCCACTCTCAGACGGTTGTGGTATGCGGTAACTGCCAGACTGTGTTGTGCCAACCAACAGGTGGACGGGCGAGGTTAACCGAAGTAATTCTCAGCCTTCCACAAGACATGTTAGTAGCACCCAGTGTTGAATTTCTCTCTATTGAAGTGGATGTGGTTTTGTTGGATATTTAA 321 0.4455 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEVILSLPQDMLVAPSVEFLSIEVDVVLLDI 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02131 106 Pfam Ribosomal protein S27 30 80 IPR000592 GO:0003735|GO:0005840|GO:0006412
Pumo6g02131 106 Hamap 30S ribosomal protein S27e [rps27e]. 24 82 IPR000592 GO:0003735|GO:0005840|GO:0006412
Pumo6g02131 106 Gene3D - 6 81 IPR023407 -
Pumo6g02131 106 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
Pumo6g02131 106 PANTHER 40S RIBOSOMAL PROTEIN S27 1 77 IPR000592 GO:0003735|GO:0005840|GO:0006412
Pumo6g02131 106 FunFam 40S ribosomal protein S27 1 82 - -
Pumo6g02131 106 SUPERFAMILY Zn-binding ribosomal proteins 30 79 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02131 Pumo-Chr6 38773382 38774391 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02131 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 96.104 4.24e-53 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02131 K02978 - jre:108997487 157.147