Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02125 ATGGTAGCCATTCTGAAGAGACAGAGAGAGAACGAATCCCTAGAGAGCATAGACTTGGCAAAGAGTCTCATCCTGCTCTCGCGTGTCCAACAAAGCAAGCCTCTTCTCAAGAGTTTTTCCCCAGTGGAGTTCGAGTGCAAGACGTGTAACCGCAAGTTCTCGTCGTTTCAGGCCCTCGGAGGCCACAGGGCCAGCCACAAGAAGCCCAAGTTCGAAGGGGAAGAGCTCAAGGAAGAGGCCAAGGCTCTGAGTCTGGGGAACAAACCCAAAATGCACGAGTGTTCCATTTGTGGCCAGGAATTCTCTCTGGGCCAGGCGCTGGGGGGTCACATGAGAAAGCACAGGGGTGCCATCAGTGAGAATAATAACGTTGAAGCGTTTCCTTCTATAAACCAAGCAATTGCGAAAGCCCCGGTTTTGAAACGATCGAATAGCAAGAGGGTCATGTGCTTGGAGCTGAACCTGAACCTAACGCCATTGGAGAATGACTTGAAGTTGCTGTTCGGAAACAAGGCTCCTAGAGTCGATCTTTCTTTGTAG 540 0.5074 MVAILKRQRENESLESIDLAKSLILLSRVQQSKPLLKSFSPVEFECKTCNRKFSSFQALGGHRASHKKPKFEGEELKEEAKALSLGNKPKMHECSICGQEFSLGQALGGHMRKHRGAISENNNVEAFPSINQAIAKAPVLKRSNSKRVMCLELNLNLTPLENDLKLLFGNKAPRVDLSL 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02125 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Pumo6g02125 179 PANTHER ZINC FINGER PROTEIN ZAT5 18 163 - -
Pumo6g02125 179 Pfam C2H2-type zinc finger 92 116 - -
Pumo6g02125 179 Pfam C2H2-type zinc finger 44 69 - -
Pumo6g02125 179 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Pumo6g02125 179 SMART c2h2final6 92 114 IPR013087 -
Pumo6g02125 179 SMART c2h2final6 44 66 IPR013087 -
Pumo6g02125 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Pumo6g02125 179 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Pumo6g02125 179 SUPERFAMILY beta-beta-alpha zinc fingers 44 114 IPR036236 -
Pumo6g02125 179 Gene3D Classic Zinc Finger 42 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02125 Pumo-Chr6 38548473 38549308 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02125 5 177 C2H2 Transcription Factor Family AT2G37430 50.000 1.45e-47 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo6g02125 zf-C2H2_6 2.3e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02125 - - gmx:100526874 267.7