Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo6g02112 | ATGAGTACCAACGAAACCAGCACCTTCTTCCCCACCTCACATGGGCAAATAAGCACTTCTGAATTTGTTAATAGCCAGAATCCATCTCAGGCTACAAATCAAGGCGTTGATGACATTAGGAAAAAGCACTATAGAGGAGTTAGGCAGAGACCTTGGGGCAAATGGGCAGCAGAAATAAGAGACCCTAAGAAAGCAGCTAGAGTGTGGCTTGGCACCTTTGACACGGCAGAAGCTGCAGCTATGGCTTATGATGCTGCGGCATTGAGGTTCAAAGGAAACAAAGCTAAGCTCAATTTTCCTGAACGCGTTGTTATGCCAATACCACCAACCAATAATAAAAATACCACTTCTTCTTCTCTTCTTCCACCACCACCACCACCACCCCATGTTGGTGGTGATCATCAAACTCTACAAACTAGTAGCAATAGTTCCCTTGCTGCAGTGTCATCATCATCAGAAGGGTTTCCAAATCTTGAGGAGTATGCACAGTTGCTGAATTGTAGCAATGATGATGATTTTCAACGTGTTGCATTGGGGCTTTACCAGCACCAGCATCACAATAATGAGGATTTTATTTATGGCTCATCACAACCACCACCAGTGCCATTTTTTCTGTCTTCTTCTTCTTCTTCTGCAATGGCATCGTCAACTTCTGAGGGTGGTGGTCAATGTGGGGTTGGAGGCTATGGTTATGCTGGATTTTTTGGTCAAGGAGGGAGTGGTTTTGATGAAGGGAACACGAGGGGGTCATAG | 753 | 0.4502 | MSTNETSTFFPTSHGQISTSEFVNSQNPSQATNQGVDDIRKKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAMAYDAAALRFKGNKAKLNFPERVVMPIPPTNNKNTTSSSLLPPPPPPPHVGGDHQTLQTSSNSSLAAVSSSSEGFPNLEEYAQLLNCSNDDDFQRVALGLYQHQHHNNEDFIYGSSQPPPVPFFLSSSSSSAMASSTSEGGGQCGVGGYGYAGFFGQGGSGFDEGNTRGS | 250 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo6g02112 | 250 | PANTHER | DNA-BINDING DOMAIN | 30 | 160 | IPR044808 | GO:0003700|GO:0009873 | |
Pumo6g02112 | 250 | Pfam | AP2 domain | 43 | 92 | IPR001471 | GO:0003700|GO:0006355 | |
Pumo6g02112 | 250 | MobiDBLite | consensus disorder prediction | 133 | 150 | - | - | |
Pumo6g02112 | 250 | Gene3D | AP2/ERF domain | 42 | 102 | IPR036955 | GO:0003700|GO:0006355 | |
Pumo6g02112 | 250 | MobiDBLite | consensus disorder prediction | 106 | 150 | - | - | |
Pumo6g02112 | 250 | FunFam | Ethylene-responsive transcription factor 2 | 42 | 101 | - | - | |
Pumo6g02112 | 250 | CDD | AP2 | 42 | 101 | IPR001471 | GO:0003700|GO:0006355 | |
Pumo6g02112 | 250 | PRINTS | Ethylene responsive element binding protein signature | 44 | 55 | IPR001471 | GO:0003700|GO:0006355 | |
Pumo6g02112 | 250 | PRINTS | Ethylene responsive element binding protein signature | 66 | 82 | IPR001471 | GO:0003700|GO:0006355 | |
Pumo6g02112 | 250 | SMART | rav1_2 | 43 | 106 | IPR001471 | GO:0003700|GO:0006355 | |
Pumo6g02112 | 250 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Pumo6g02112 | 250 | ProSiteProfiles | AP2/ERF domain profile. | 43 | 100 | IPR001471 | GO:0003700|GO:0006355 | |
Pumo6g02112 | 250 | SUPERFAMILY | DNA-binding domain | 43 | 101 | IPR016177 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo6g02112 | Pumo-Chr6 | 38202348 | 38204615 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo6g02112 | 13 | 126 | AP2-EREBP Transcription Factor Family | AT5G61890 | 59.016 | 9.72e-41 | 139 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Pumo6g02112 | AP2 | 5.3e-15 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo6g02112 | - | - | gmx:100806383 | 298.901 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo6g02112 | 6 | 38202348 | 38204615 | Pumo5g02108 | 5 | 57582173 | 57583853 | PCT |