Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02112 ATGAGTACCAACGAAACCAGCACCTTCTTCCCCACCTCACATGGGCAAATAAGCACTTCTGAATTTGTTAATAGCCAGAATCCATCTCAGGCTACAAATCAAGGCGTTGATGACATTAGGAAAAAGCACTATAGAGGAGTTAGGCAGAGACCTTGGGGCAAATGGGCAGCAGAAATAAGAGACCCTAAGAAAGCAGCTAGAGTGTGGCTTGGCACCTTTGACACGGCAGAAGCTGCAGCTATGGCTTATGATGCTGCGGCATTGAGGTTCAAAGGAAACAAAGCTAAGCTCAATTTTCCTGAACGCGTTGTTATGCCAATACCACCAACCAATAATAAAAATACCACTTCTTCTTCTCTTCTTCCACCACCACCACCACCACCCCATGTTGGTGGTGATCATCAAACTCTACAAACTAGTAGCAATAGTTCCCTTGCTGCAGTGTCATCATCATCAGAAGGGTTTCCAAATCTTGAGGAGTATGCACAGTTGCTGAATTGTAGCAATGATGATGATTTTCAACGTGTTGCATTGGGGCTTTACCAGCACCAGCATCACAATAATGAGGATTTTATTTATGGCTCATCACAACCACCACCAGTGCCATTTTTTCTGTCTTCTTCTTCTTCTTCTGCAATGGCATCGTCAACTTCTGAGGGTGGTGGTCAATGTGGGGTTGGAGGCTATGGTTATGCTGGATTTTTTGGTCAAGGAGGGAGTGGTTTTGATGAAGGGAACACGAGGGGGTCATAG 753 0.4502 MSTNETSTFFPTSHGQISTSEFVNSQNPSQATNQGVDDIRKKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAMAYDAAALRFKGNKAKLNFPERVVMPIPPTNNKNTTSSSLLPPPPPPPHVGGDHQTLQTSSNSSLAAVSSSSEGFPNLEEYAQLLNCSNDDDFQRVALGLYQHQHHNNEDFIYGSSQPPPVPFFLSSSSSSAMASSTSEGGGQCGVGGYGYAGFFGQGGSGFDEGNTRGS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02112 250 PANTHER DNA-BINDING DOMAIN 30 160 IPR044808 GO:0003700|GO:0009873
Pumo6g02112 250 Pfam AP2 domain 43 92 IPR001471 GO:0003700|GO:0006355
Pumo6g02112 250 MobiDBLite consensus disorder prediction 133 150 - -
Pumo6g02112 250 Gene3D AP2/ERF domain 42 102 IPR036955 GO:0003700|GO:0006355
Pumo6g02112 250 MobiDBLite consensus disorder prediction 106 150 - -
Pumo6g02112 250 FunFam Ethylene-responsive transcription factor 2 42 101 - -
Pumo6g02112 250 CDD AP2 42 101 IPR001471 GO:0003700|GO:0006355
Pumo6g02112 250 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Pumo6g02112 250 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Pumo6g02112 250 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Pumo6g02112 250 MobiDBLite consensus disorder prediction 1 34 - -
Pumo6g02112 250 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Pumo6g02112 250 SUPERFAMILY DNA-binding domain 43 101 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02112 Pumo-Chr6 38202348 38204615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02112 13 126 AP2-EREBP Transcription Factor Family AT5G61890 59.016 9.72e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo6g02112 AP2 5.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02112 - - gmx:100806383 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02112 6 38202348 38204615 Pumo5g02108 5 57582173 57583853 PCT