Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02072 ATGGTTTACTCCTTCTATGACAAAACCTCTTCATCTGGCTCTGATATTTCGGGGCTGTTCAATCCTACTTTGCATAACCTTGGAGCTTCCAATGATGTTTCAAGGGGTGGCTTGTCATCACCTCATTCTTTGGTTTTTGAGAGTGAGAAGGGAGAGCTGGTGAAGTGCCCTTCAACTGCAAGGGTAGGGAAGAATGGGATTTGTGAAGCCAAAGCTTTGGCTGCCTTGAAGAACCATAGTGAAGCAGAGAGGAGGAGGAGGGAGAGAATAAACGGTCATCTTGCAACACTACGTGGCCTTGTACCATCCACTGAAAAGATGGATAAAGCGACTTTACTGGCTGAAGTGATTAGCCAAGTGAAGGAATTGAAGAAAAATGCGGTGGAAGCAAGCAAGGGTTTTCTGATCCCAATGGATGCTGATGAAGTGAAAGTTGAACCATATGATGATGAAGGAGGAGATGGATCCATGTCTTACAGTGCAACTATCTGCTGTGATTTCAGACCTGAAATACTATCTGACCTAAGACAGACCCTTGATGCCCTTCCACTACATCTAGTGAAGGCAGAAATTTCAACTTTGGCAGGTAGAATGAAGAATGTGTTTGTCTTTACATGCTGCAAAGGGAACATTAATATTGATACTGAAAAATGCCAAGCTCTTGCAAGTACTGTTCAACAGGCACTAAGTTCTGTACTGGATAAGGCTTCTGCCTCACTGGAGTTCTCACCCAGAACATCACATGCAAGCAAGAGGAGAAGACTATGCTTTATTGAAACATCCACTTCCTCATGCAACCATGGATCTTGTTTGTGCTGA 819 0.4371 MVYSFYDKTSSSGSDISGLFNPTLHNLGASNDVSRGGLSSPHSLVFESEKGELVKCPSTARVGKNGICEAKALAALKNHSEAERRRRERINGHLATLRGLVPSTEKMDKATLLAEVISQVKELKKNAVEASKGFLIPMDADEVKVEPYDDEGGDGSMSYSATICCDFRPEILSDLRQTLDALPLHLVKAEISTLAGRMKNVFVFTCCKGNINIDTEKCQALASTVQQALSSVLDKASASLEFSPRTSHASKRRRLCFIETSTSSCNHGSCLC 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02072 272 CDD ACT_UUR-ACR-like 162 229 - -
Pumo6g02072 272 SMART finulus 80 129 IPR011598 GO:0046983
Pumo6g02072 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 123 IPR011598 GO:0046983
Pumo6g02072 272 Gene3D - 71 132 IPR036638 GO:0046983
Pumo6g02072 272 PANTHER TRANSCRIPTION FACTOR BHLH30 34 259 IPR045847 GO:0003700|GO:0006355
Pumo6g02072 272 Pfam Helix-loop-helix DNA-binding domain 78 123 IPR011598 GO:0046983
Pumo6g02072 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 125 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02072 Pumo-Chr6 36063106 36067142 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02072 67 255 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 46.073 1.10e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo6g02072 HLH 6.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02072 - - gmx:100804756 501.516