Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02045 ATGAATTTCCCATCCACTATTCCTCTAGCACTTGCTACCTATTTGTTCATCATTTCCTTTGTTCTCATTATTAATTGCTACCAAGCTGAGGCTACAAATGGAGACAACAAGGTCATATCTATAGGTGCAATAATTGATGTTAACTCTCGCGTTGGGAAAGAACAGCGTGTAGCCATGGACCTTGCAGCTCAAAGTTACAATAACACTTCCAAGAGCCACAAGCTGGCTCTTCATTTTCAGGAACCCACCAATGATCCCTTCAGACCCACTTCTCTTGCTAGAAAGATGATTAAAACGCAGAAGGTGCAAGTGATTATAGGGATGCACACATGGACAGAAGCAGCTTCAGTGGCTGAATTAGGACGCAAAACTCAAGTTCCTGTCATATCCTTTGCAGCACCTACCATTACCCTGCCATTGATGCCAACTCGCTGGCCTTTCTCGGTAAGAATGGCCAACAATGGCACTGCATATGCAAAATGTGTTGCAGATATGGTGCATGCTTATAGTTGGCAGAGAGTAGTAGTCATTTATGAAGATGGAGATTATGAGATGCTAGCACTGCTATCTGAGACCCTCCAAGATGTTGGTTCAATGATTGAATACCGTTTAGCTCTTCCATCACCTTCTTATCTGCCTAATCCTGGAGAGTTCATTCGCGAAGAGTTGCATAAGTTGATTGAAAATACACAATCCCGGGTGTTCATTGTTCTGCAATCATCATTAGAAATGGTGATCCATTTGTTCAGAGAAGCTTCACAATTGGGACTAGTGGAAGGAGAATCAGCTTGGATAATCCCAGAGAGCATAACTAATTTGCTTGACTCTGTCAACAAGTCTGCTATTTCCTACATGGAAGGAGCTCTAGGAATCAAGACCTACTACTCTGAACATAGCAGTGAGTATCAAGATTTTGAGGCTCAGTTCCGGAAATCTTTTCGGGCCAAGTATCCTGAGGAGGATAACCGCGATCCAGGATTTTATGCTCTGCAAGCATATGATAGCATTAAAATTGTTGCACAAGCAATAGATAGAATGGCCAGTGGCAGAAAGACTTTCCTAACGGAAATATTGTCTAGCAATTTCCCTGGCTTAAGTGGAGAAATTCGATTCGAAGCAGCACAGCTCTTGCAGAATCCTACCTTCAGGATTGTAAATGTAGATAGGAAGACTTACAGAGAATTAGACCTTTGGACTCTAGAACGTGGGTTCATCACTAACCTCACTACAGAACAAGGTTCAAATAGTGTTTCTAGGAACACAGAAAGTTTAAGTGGTGTTGTAATATGGCCAGGGAAACTAAAAGATAGAGCTCCAAAGGGATGGAATCTGCCTACTAAACAAAATCCAATGAAAATAGCAGTTCCTGGAAGAACCTCCTTTTCCAAGTTTGTCAAGGTTGATCGTGACGAGCTTACAAATTCATATAAATATAGTGGATTCTGCATTGAAATTTTTAAGAAGGTGAAAGACATTTTGGGGTATGATCTGCCATATGAGTTTCATCCCATCAATGGAACCTATCCCGATCTGGTTCAACTTGTCTATAACAAGACTTTTGAGGCTGTTATTGGAGACGTGACCATATTAGAAGAAAGATTGCAATATGTAGATTTTACTGTGCCATATGCAGAATCAGGATTGTCAATGATAGTTACAGCAAAGTCAAGAGAATCAACATGGATGTTTATGAAGCCCTTCACCTGGCAGATGTGGGTGGCAACTGGTGCCATGTTGATGTACACAATGGTAGTTGTGTGGTACCTGGAGCGGGAACCAAATCCTGAGTTTCATGGCAATTGGAAAAGCCAGATCAGCACTGCTCTTATGTTTACCTTCTCCTCTCTATTCTTTGCGCACAGGGAGAAAATCTATAGCCATTTATCTCGTGTGGTGATGGTATCATGGCTGTTTCTAGTATTGATTCTAAACTCAAGCTACACTGCTAGTCTTTCTTCCATGCTCACAGTTCAACGACTGCAACCAAATGTAACGGACATCGAGTACCTGAAGAAGAACAACATGAAAATTGGTTGTGATGGAGATTCATTTATTAGGACATACCTAGAGAAAGTCGAAAGATTCAAGCCAGAGAACATCATAAACATTAATAGTGAATATAGTTATGAAGATGCATTCAAAAACAACTCAATAGCTGCTGCTTTTCTCGAAACCCCCTATGAAAAAGTATATATCAGTAAATACTGCAAGGGATACTCTGCCTTTGTACCTACCACCAAATTCGCAGGACTGGGATTTATGTTCCAGAAAGGCTCTCCAGTGGCCAGAGACTTTTCCAAAGCTATACTGAATCTCTTGGAGCATGGAGAACTGAAGAAGTTAGAAGACAAATGGTTGAACGGTGCAGGAGAGTGCTCGAACAATTCGACGTCTGAGAGCACAGAAAGTTTGAGGCTTGAAAGTTTCTGGGTTCTGTACGTGATCTCTGGTGCCACTTCTACTATTTGTTTTCTACTTTATACAATCCAGTCACTGAAATCTAGACAAACATCACAAGATGAAAGCCGATGGAAAAGGGTAGTTATAATAGCTAAGCAGATTTATAGCAGAAAGCATGCACCAGTGACACCCGTGAATCACCAGCCACAGGCTCCACAATTACCAGATATCATAACAGTGTCTTCCCCGCCAACGGTTACTATTCAAAACCCATGA 2676 0.4141 MNFPSTIPLALATYLFIISFVLIINCYQAEATNGDNKVISIGAIIDVNSRVGKEQRVAMDLAAQSYNNTSKSHKLALHFQEPTNDPFRPTSLARKMIKTQKVQVIIGMHTWTEAASVAELGRKTQVPVISFAAPTITLPLMPTRWPFSVRMANNGTAYAKCVADMVHAYSWQRVVVIYEDGDYEMLALLSETLQDVGSMIEYRLALPSPSYLPNPGEFIREELHKLIENTQSRVFIVLQSSLEMVIHLFREASQLGLVEGESAWIIPESITNLLDSVNKSAISYMEGALGIKTYYSEHSSEYQDFEAQFRKSFRAKYPEEDNRDPGFYALQAYDSIKIVAQAIDRMASGRKTFLTEILSSNFPGLSGEIRFEAAQLLQNPTFRIVNVDRKTYRELDLWTLERGFITNLTTEQGSNSVSRNTESLSGVVIWPGKLKDRAPKGWNLPTKQNPMKIAVPGRTSFSKFVKVDRDELTNSYKYSGFCIEIFKKVKDILGYDLPYEFHPINGTYPDLVQLVYNKTFEAVIGDVTILEERLQYVDFTVPYAESGLSMIVTAKSRESTWMFMKPFTWQMWVATGAMLMYTMVVVWYLEREPNPEFHGNWKSQISTALMFTFSSLFFAHREKIYSHLSRVVMVSWLFLVLILNSSYTASLSSMLTVQRLQPNVTDIEYLKKNNMKIGCDGDSFIRTYLEKVERFKPENIININSEYSYEDAFKNNSIAAAFLETPYEKVYISKYCKGYSAFVPTTKFAGLGFMFQKGSPVARDFSKAILNLLEHGELKKLEDKWLNGAGECSNNSTSESTESLRLESFWVLYVISGATSTICFLLYTIQSLKSRQTSQDESRWKRVVIIAKQIYSRKHAPVTPVNHQPQAPQLPDIITVSSPPTVTIQNP 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02045 891 Pfam Ligand-gated ion channel 788 817 IPR001320 GO:0015276|GO:0016020
Pumo6g02045 891 Gene3D - 154 399 - -
Pumo6g02045 891 Gene3D - 560 696 - -
Pumo6g02045 891 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 834 IPR015683 -
Pumo6g02045 891 Gene3D - 459 559 - -
Pumo6g02045 891 Pfam Receptor family ligand binding region 57 389 IPR001828 -
Pumo6g02045 891 SUPERFAMILY Periplasmic binding protein-like II 438 787 - -
Pumo6g02045 891 FunFam Glutamate receptor 158 323 - -
Pumo6g02045 891 Pfam Bacterial extracellular solute-binding proteins, family 3 475 787 IPR001638 -
Pumo6g02045 891 Gene3D - 730 794 - -
Pumo6g02045 891 FunFam Glutamate receptor 560 698 - -
Pumo6g02045 891 CDD PBP1_GABAb_receptor_plant 40 404 IPR044440 -
Pumo6g02045 891 Gene3D - 41 380 - -
Pumo6g02045 891 PIRSF IGluLR_plant 9 352 IPR017103 -
Pumo6g02045 891 PIRSF IGluLR_plant 345 880 IPR017103 -
Pumo6g02045 891 SUPERFAMILY Periplasmic binding protein-like I 36 442 IPR028082 -
Pumo6g02045 891 SMART GluR_14 452 788 IPR001320 GO:0015276|GO:0016020
Pumo6g02045 891 CDD GluR_Plant 449 786 - -
Pumo6g02045 891 FunFam Glutamate receptor 450 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02045 Pumo-Chr6 34590800 34594769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02045 15 842 Ion Channels AT2G29120 32.757 2.41e-142 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02045 - - gmx:100780320 1561.58