Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02040 ATGGCTAATCATGCAGCTTCTGAAGGGATTCTTGAGAATGTGTGGGCTAAAATTATGAGCAGTGATAGAAGGGGTGATGCAGCAGAATCTCCTCACTCCTTGGAAGAACAGCCTAAGCCTCCTGATGGAAGAGAAGGGTCAATGGAGATTCTGAAAAGGCTTCCAAGTTTAGGGAGATGGATATCAATGGGGGCTGATTTCTGGGAAGAAATTTTATCTAGTACTGTTGTTCTAACTGCTGCAAGCAATAATAAAGAAGATTCTGGTGGCACCATTATGGAAATTGGAAGTGCCACTAAATCCAAAAATAATAAGGGAGAAGAATATGGTGTGAGAGCAGAAAAAGTTGTAGCAAAACACTATAGGGGAGTAAGGAGAAGGCCATGGGGTAAATATGCAGCTGAGATTAGAGATCCATCAAAGAAAGGTGCTAGGGTTTGGCTTGGGACATTTGAAACAGCTGAAGAAGCAGCTATGGCTTATGACAAGGCTGCTTTGAGAATTAGAGGTCCAAAGGCATACCTCAATTTCCCACCTGAGACCCAGGCTTCAGGAATTGGCCAGAAAGGAACCAGTTGGGACAAGGAAAACTCTTGCAATGCCCGGAAGAGAAAAGAAGAATTTGTGAATGAAAAACCTCTAACAAAAAAATTGGCAACATTGGAAAGCGTGCTAGAAAATGATCTTGTTGATGTTTTTGTGTTTCAGGACTTGGGGAGTGATTACTTGGACAATTTGCTCTCTACTTTTTAG 753 0.4197 MANHAASEGILENVWAKIMSSDRRGDAAESPHSLEEQPKPPDGREGSMEILKRLPSLGRWISMGADFWEEILSSTVVLTAASNNKEDSGGTIMEIGSATKSKNNKGEEYGVRAEKVVAKHYRGVRRRPWGKYAAEIRDPSKKGARVWLGTFETAEEAAMAYDKAALRIRGPKAYLNFPPETQASGIGQKGTSWDKENSCNARKRKEEFVNEKPLTKKLATLESVLENDLVDVFVFQDLGSDYLDNLLSTF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02040 250 MobiDBLite consensus disorder prediction 21 47 - -
Pumo6g02040 250 PANTHER DNA-BINDING DOMAIN 88 215 IPR044808 GO:0003700|GO:0009873
Pumo6g02040 250 SMART rav1_2 120 184 IPR001471 GO:0003700|GO:0006355
Pumo6g02040 250 FunFam Ethylene-responsive transcription factor 2 119 180 - -
Pumo6g02040 250 Gene3D AP2/ERF domain 119 179 IPR036955 GO:0003700|GO:0006355
Pumo6g02040 250 SUPERFAMILY DNA-binding domain 120 179 IPR016177 GO:0003677
Pumo6g02040 250 ProSiteProfiles AP2/ERF domain profile. 120 178 IPR001471 GO:0003700|GO:0006355
Pumo6g02040 250 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Pumo6g02040 250 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Pumo6g02040 250 Pfam AP2 domain 120 170 IPR001471 GO:0003700|GO:0006355
Pumo6g02040 250 CDD AP2 119 178 IPR001471 GO:0003700|GO:0006355
Pumo6g02040 250 MobiDBLite consensus disorder prediction 22 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02040 Pumo-Chr6 34481392 34482144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02040 119 249 AP2-EREBP Transcription Factor Family AT3G23240 47.445 3.58e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo6g02040 AP2 2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02040 - - gmx:100820226 289.271