Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02038 ATGTCTTCTTCCAACAGACACTGGCCAAGCATGTTCAAATCCAAGCCTTGCAATCCCCACAACCAATGGCAGCATGACATCAACTCCTCTCTCATTTCCCCAGGATGCCAAAAAAGCCCTTATACTTCAGGTGGTGAAGAGAGAACTCCAGAACCAAAGCCAAGATGGAACCCAAAACCGGAGCAGATTCGCATTCTGGAAGCCATCTTCAACTCTGGGATGGTGAATCCCCCAAGGGACGAGATAAGGAAGATCCGGCTGCAATTGCAAGAGTATGGCCAAGTGGGTGATGCCAATGTCTTCTACTGGTTCCAGAACCGTAAATCCAGGAGCAAGCACAAGCTGCGCCACCTCCAAAACTCGAAGAACCAAAATGCAGATGCACAACAGAAGAAGGTTGATGCTTCTCTCTCTCAAGTCACACCACCTTCATCCTCATCCTCTTCATCTGACAAATCGTCTCCAAAAGAATTAGCATACCCCAATGGATTATTCTCCTTTGGCTTCTCAAATGTCAATGATGCAGTGCCCAATTCTCCAACGGCCTCTGTGAATCAGACTTACTTTCAGTCACATAACCACAGTGACACCAATTTGCTACCACCAGCACCCGAGCCTTTCTCCTTTGCTGTGCACAGTAGCGGGCAAGGTGTAGTAGCTAATAATAATACCATAACAACGCATGGGTTTTCTGTCCCTCAATTCTCCAACAATATGATGCAATCTGAACTGCAGTGTCAACAAAATGTTGGGCCTTGCACTAATCTTTTGCTTAATGAAATCATGAACCATGGAACCAGGAAAGACCAAGATCAAGACAAGGCATTGAAGATAATGCAGCATCACCCACAACATAGTTTCTCTCTCACTGCAACTCCAACCACAACCTGTGTTCCTCCCATCTCAACAGTTCCACATCCCATCACTGAACTTCAAGGTAGTGTTGGTGAGGTTGCAGCAGATAGGGCAAAATGTACAGTGTTCATTAACAATGTCGCATTCGAGGTTGTAATGGGGCCCTTCAACGTGCGCCAAGCCTTTGGGGATGAAGCCATGCTTATCCACTCTTCCGGTGATCCTGTTCCCACCGATGAGTGGGGCATCTCCCTCCACCCACTGCAGCATGGTGCTTATTACTATCTGGTATTTAAGGAAATGAAGCTGGAGGAGGACAACAGGATTTAG 1185 0.4684 MSSSNRHWPSMFKSKPCNPHNQWQHDINSSLISPGCQKSPYTSGGEERTPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRLQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNSKNQNADAQQKKVDASLSQVTPPSSSSSSSDKSSPKELAYPNGLFSFGFSNVNDAVPNSPTASVNQTYFQSHNHSDTNLLPPAPEPFSFAVHSSGQGVVANNNTITTHGFSVPQFSNNMMQSELQCQQNVGPCTNLLLNEIMNHGTRKDQDQDKALKIMQHHPQHSFSLTATPTTTCVPPISTVPHPITELQGSVGEVAADRAKCTVFINNVAFEVVMGPFNVRQAFGDEAMLIHSSGDPVPTDEWGISLHPLQHGAYYYLVFKEMKLEEDNRI 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02038 394 MobiDBLite consensus disorder prediction 113 156 - -
Pumo6g02038 394 Gene3D - 53 119 - -
Pumo6g02038 394 CDD homeodomain 52 114 IPR001356 GO:0003677
Pumo6g02038 394 SUPERFAMILY Homeodomain-like 46 117 IPR009057 -
Pumo6g02038 394 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 383 IPR044557 GO:0003700|GO:0050793
Pumo6g02038 394 MobiDBLite consensus disorder prediction 121 156 - -
Pumo6g02038 394 SMART HOX_1 51 118 IPR001356 GO:0003677
Pumo6g02038 394 MobiDBLite consensus disorder prediction 1 44 - -
Pumo6g02038 394 MobiDBLite consensus disorder prediction 1 60 - -
Pumo6g02038 394 ProSiteProfiles 'Homeobox' domain profile. 49 114 IPR001356 GO:0003677
Pumo6g02038 394 FunFam WUSCHEL-related homeobox 11 53 120 - -
Pumo6g02038 394 Pfam Homeodomain 53 113 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02038 Pumo-Chr6 34446659 34448820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02038 1 383 Wox Gene Family AT2G33880 45.540 5.74e-88 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pumo6g02038 Homeodomain 4.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02038 - - gmx:100777643 600.512