Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02020 ATGGTTTTCAGTAGCAATGGCACTGAAGAGAGCGAACTGTATCACGCTCAAATCCATTTATACAAACACGTATACAACTTCGTGAGCTCCATGGCTCTCAAGTCTGCTATGGAATTAGGCATAGCAGACGTAATCCACAGCCATGGAAAACCCATGACCATTTCCGAGTTATCTTCAGAGCTGAAACTGCACCCCTCAAAAGTCGGTGTTCTCCACCGCTTTCTCCGCCTTCTAACACACAACGGGTTCTTCGCCAAAACAACGGTGCCGTCGCTAGAACGGTGGAGAAGGAGGAGAAGAGACAGCGTATGCTCTCACTCCTCCTTCCAAGCTTCTAATCAGAAGTAA 348 0.477 MVFSSNGTEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADVIHSHGKPMTISELSSELKLHPSKVGVLHRFLRLLTHNGFFAKTTVPSLERWRRRRRDSVCSHSSFQASNQK 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02020 115 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 115 IPR016461 GO:0008168
Pumo6g02020 115 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Pumo6g02020 115 SUPERFAMILY "Winged helix" DNA-binding domain 10 87 IPR036390 -
Pumo6g02020 115 Gene3D - 1 110 IPR036388 -
Pumo6g02020 115 FunFam Coniferyl alcohol 9-O-methyltransferase 3 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02020 Pumo-Chr6 33970731 33971078 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02020 28 79 Monolignol Biosynthesis Gene Families AT5G54160 43.396 1.78e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02020 - K22588 gmx:100807589 165.236