Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02017 ATGGATTTCAGTAGCAATGGCACTGAAGAGAGCGAACTGTATGGCGCTCAAATCCATTTGTACAAACATGTATACAACTTCATGACCTCAATGGCTCTCAAGTGTGCTGCGGAGCCAGGCATAGCAGACGCAATTCACAGCCACGGAAAACCCATGACTCTTTCCGAGCTGACCTCAGCTCTGAAACTGCACCCCTCAAAAGTTAGTGTTCTCCATCGCTTCATGCGTCTTCTAACACACAACGGGTTCTTCACCAAAACAACAGTGCCATCATCATCATCATCATCATCACAGAACGGTAAAGAAACAGCAGCAGCATATGCTCTCACTCCTCCTTCCAAGCTTCTAATCAGAAGCAAGCCAACCTGCTTAGCGTCTTTCGTTCTGGGAGCACTTCATCCATACGCGTTTGAAATATGGCCCTCCTCCAAGAAATGGTTCACTGAGGATAAGGAGGTCCCGCTGTACGAGAGCGCGGCGGGGGAGAGCTTGTGGGACTTTATGAACAACGATTTTGATGTTCTGGCTTTGTTTCAAGACGCAATGACAGCTGATTCTCAAACGGTGGAGCTTGGTCTCAAAGGATGCAAGCATGTGTTCGAGGGATTGGGTTCTCTTGTTGACGTGGGAGGTGGGACTGGTGCCGTCGCAAGGCTCATCAATGAAGCCTTCCCTCACTTGAAATGCACAGTGTTTGACCAACCACAAGTTGTCGCTAACTTGACAGGAACCCAAAATTTGAATTTTGTTGGTGGAGATATGTTCAAGTCCATCCCTTCTGCTGATGCCGTTTTACTCAAGTTAGTTTTGCATGATTGGAATGATGAACTCTGCATAAAGATATTGAAGAACTGTAAAGAAGCTATTTCTGGGAAAAGGAAAGAAGGAAAGGTAATAATCATAGACATAGTAATTGATGAAGCAGGTGATGATCGTGAAATAACAGAGTTGAAGCTAGACTATGACTTGGTGATGCTGACTCTGTTCAATGGAAAAGAAAGAGAAAAGAAAGAACGGGAGAAACTCATATACGATGCTGGCTTGGTGAAAGCTAGGGTGAAGTAG 1065 0.4526 MDFSSNGTEESELYGAQIHLYKHVYNFMTSMALKCAAEPGIADAIHSHGKPMTLSELTSALKLHPSKVSVLHRFMRLLTHNGFFTKTTVPSSSSSSSQNGKETAAAYALTPPSKLLIRSKPTCLASFVLGALHPYAFEIWPSSKKWFTEDKEVPLYESAAGESLWDFMNNDFDVLALFQDAMTADSQTVELGLKGCKHVFEGLGSLVDVGGGTGAVARLINEAFPHLKCTVFDQPQVVANLTGTQNLNFVGGDMFKSIPSADAVLLKLVLHDWNDELCIKILKNCKEAISGKRKEGKVIIIDIVIDEAGDDREITELKLDYDLVMLTLFNGKEREKKEREKLIYDAGLVKARVK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02017 354 Pfam O-methyltransferase domain 143 347 IPR001077 GO:0008171
Pumo6g02017 354 ProSiteProfiles Sigma-54 factors family profile. 47 165 - -
Pumo6g02017 354 SUPERFAMILY "Winged helix" DNA-binding domain 10 120 IPR036390 -
Pumo6g02017 354 FunFam O-methyltransferase ZRP4 119 354 - -
Pumo6g02017 354 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 354 IPR016461 GO:0008168
Pumo6g02017 354 PANTHER O-METHYLTRANSFERASE 16 347 IPR016461 GO:0008168
Pumo6g02017 354 PIRSF O-mtase 1 354 IPR016461 GO:0008168
Pumo6g02017 354 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 121 351 IPR029063 -
Pumo6g02017 354 Gene3D Vaccinia Virus protein VP39 118 354 IPR029063 -
Pumo6g02017 354 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Pumo6g02017 354 FunFam Coniferyl alcohol 9-O-methyltransferase 3 116 - -
Pumo6g02017 354 Gene3D - 1 116 IPR036388 -
Pumo6g02017 354 CDD AdoMet_MTases 206 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02017 Pumo-Chr6 33608602 33610420 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02017 31 353 Monolignol Biosynthesis Gene Families AT5G54160 32.515 9.27e-43 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02017 K22588 - gmx:106795493 506.138