Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02014 ATGGCTTCTCTCATCGATCTCAACAACGCCACCGAGGACGATGAAACGCTGTCGTCTGGCTCCAACAACTCCTCCTCCTCCTCCTCCTCCGTGTGCCTCGAGCTCTGGCACGCGTGCGCGGGTCCAATGATTTGCTTGCCTAAGAAAGGGAGCGTTGTCGTGTACTTCCCACAAGGACACTTGGAGCAACACCTCCACGATTTCCCGCTCCCTGCCTCTGCCAACATCCCCTCCCATGTCTTCTGTCGCGTTCTCGATGTCAAGCTTCATGCTGAGGAAGGGAGTGATGAAGTGTATTGCCAGGTGGTCTTGGTTCCCGAAAGTGAGCAAGTGCAGCAGAAGCTGCGGGAGGGGGAAATTGATGCTGATGGGGAAGAGGAGGATGCTGAAGCTGTGATGAAGGCAACCACGCCCCACATGTTCTGCAAGACTTTGACTGCTTCTGATACTAGCACTCATGGTGGATTCTCTGTGCCTCGTCGCGCGGCCGAAGATTGCTTTCCTCCCCTGGATTACAGTCAACAGAGACCTTCACAGGAGCTTGTGGCAAAGGATCTGCATGGCCAGGAATGGAGGTTTCGACATATTTACAGGGGGCAGCCACGAAGACACTTGCTTACTACCGGTTGGAGTGCGTTTGTGAACAAGAAGAAACTTGTATCTGGAGATGCTGTTCTGTTTCTTAGGGGTGAGGATGGAGAACTGAGATTGGGAATTCGTAGGGCTGCTCAATTGAAAAGTGGCAGTACCTTTTCAGCTCTTTCTGGCCAGCAATTGAATCTTAGCAGTCTTATGGATGTGGTTAATGCTTTATCTACAAGATGTGCCTTTAGCATTCACTATAATCCGAGGGTCAGCTCATCTGAGTTCATCATACCTATCCACAAATTCTTAAAGAGCCTTGATTATTCTTATTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAGAGAAGATTCACAGGATTAATTGTTGGAATTACTGATGTGGATCCTGTTAGATGGCCTGGATCAAAATGGAGATGCCTAATGGTAAGGTGGGATGACTTAGAAGCCACAAGGCATAATAGGGTTTCCCCATGGGAGATTGAGCCATCTGGTTCTGGTTCTACTGCGAATAACTTGATATCAGCTGGTTTGAAGAGGACCAAGATTGGATTGCCTTCAGCCAAGCTAGAATTTCCAGTTCCCAATGCGATTGGAACATCAGACTTTGGGGAATCACTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATGTTGGGTGTTAATACTACTTTTGATAGTATTAATGCTCAGAGTCACCAGCTATCTGATTTGAGGAGGTGCTATCCTGGCTCAAACTGTCCTAGGATTGCTGCAACAGGAAATAGCATTGGAATCCCATCCAATGTTTCCAGCAATAGCATAGGCTTTAGTGAATCTTTCAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATATGGAAGGGCCCTGTCTGTTGACTGA 1518 0.4769 MASLIDLNNATEDDETLSSGSNNSSSSSSSVCLELWHACAGPMICLPKKGSVVVYFPQGHLEQHLHDFPLPASANIPSHVFCRVLDVKLHAEEGSDEVYCQVVLVPESEQVQQKLREGEIDADGEEEDAEAVMKATTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSGSTFSALSGQQLNLSSLMDVVNALSTRCAFSIHYNPRVSSSEFIIPIHKFLKSLDYSYSVGMRFRMRFETEDAAERRFTGLIVGITDVDPVRWPGSKWRCLMVRWDDLEATRHNRVSPWEIEPSGSGSTANNLISAGLKRTKIGLPSAKLEFPVPNAIGTSDFGESLRFQKVLQGQEMLGVNTTFDSINAQSHQLSDLRRCYPGSNCPRIAATGNSIGIPSNVSSNSIGFSESFRFQKVLQGQEILPSQPYGRALSVD 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02014 505 CDD B3_DNA 139 241 IPR003340 GO:0003677
Pumo6g02014 505 ProSiteProfiles B3 DNA-binding domain profile. 141 243 IPR003340 GO:0003677
Pumo6g02014 505 FunFam Auxin response factor 139 243 - -
Pumo6g02014 505 Pfam Auxin response factor 268 348 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo6g02014 505 Gene3D - 304 377 - -
Pumo6g02014 505 Pfam B3 DNA binding domain 141 242 IPR003340 GO:0003677
Pumo6g02014 505 SUPERFAMILY DNA-binding pseudobarrel domain 136 249 IPR015300 -
Pumo6g02014 505 FunFam Auxin response factor 304 375 - -
Pumo6g02014 505 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 29 433 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo6g02014 505 Gene3D - 139 243 IPR015300 -
Pumo6g02014 505 SMART B3_2 141 243 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02014 Pumo-Chr6 33459716 33463461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02014 27 492 B3 DNA Binding Superfamily AT5G60450 51.363 7.64e-150 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo6g02014 B3 5.2e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02014 K14486 - gmx:100808119 932.554